Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggactccaatcttggcctttgtttttgtgtttatttttgcctagcatgttatttattttcaaagtcttgatgattagGTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAGAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAA

Basic information

species Zea mays
transcript GRMZM2G442404_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G442404_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g15594.1 (Oryza sativa), 3'ss of exon 2
gtatggactccaatcttggcctttgtttttgtgtttatttttgcctagcatgttatttattttcaaagtcttgatgattagGTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAGAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAA
||||||  |||| ||||  | | | |  ||  ||   |   |||| | |||||| ||| |||| ||  | | |   |||||||||||| ||| ||||||||||||||||||||| |||  | ||||| || || ||||| || |||||||| ||| |||| |||||||||||||| ||||
gtatggtttcca-tctttccttgtctactttcgtgattccgtgcccaccatgtt-tttcttttgaagatttggtgcattagGTCATGGAGGACCACGTGCTGCTGAGTATTTGAAGGAAAATTTGTTCGAAAATCTTCTGAAACACCCTGAGTTCCTGACAGATACAAAGCTTGCCATAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtgtttatttttgcctagcatgttatttattttcaaagtcttgatgattagGTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAGAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAA
                                          tcttgat  putative branch site (score: 4)
                       atgttatttattttca  TA-rich tract