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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttagttgagactatatgtgacatttttttgctgaacttgttctatctctcaagattatgcttcattctataattaatcaccactctatttttggcagTCATGGTTGTTTCTGCTTACCTGCTTTAAATTCACTATCAACTGTTTTCCAGCTTGTCCTTTGGGTGCTTATTGTCCACTTGGGACATTGAACGACACTA

Basic information

species Zea mays
transcript GRMZM2G430675_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18661984|gb|BM501682.1|BM501682
EST:     GCCATGTTGTCCGGGTTTCTTCTGCCCTCGGGGCCTGACATGCATGATGC                         TCATGGTTGTTTCTGCTTACCTGCTTTAAATTCACTATCAACTGTTTTCCA
genomic: GCCATGTTGTCCGGGTTTCTTCTGCCCTCGGGGCCTGACATGCATGATGCgtaagttttc ... tttttggcagTCATGGTTGTTTCTGCTTACCTGCTTTAAATTCACTATCAACTGTTTTCCA
EST: gi|18654968|gb|BM499773.1|BM499773
EST:     GCCATGTTGTCCGGGTTTCTTCTGCCCTCGGGGCCTGACATGCATGATGC                         TCATGGTTGTTTCTGCTTACCTGCTTTAAATTCACTATCAACTGTTTTCCA
genomic: GCCATGTTGTCCGGGTTTCTTCTGCCCTCGGGGCCTGACATGCATGATGCgtaagttttc ... tttttggcagTCATGGTTGTTTCTGCTTACCTGCTTTAAATTCACTATCAACTGTTTTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctctcaagattatgcttcattctataattaatcaccactctatttttggcagTCATGGTTGTTTCTGCTTACCTGCTTTAAATTCACTATCAACTGTTTTCCAGCTTGTCCTTTGGGTGCTTATTGTCCACTTGGGACATTGAACGACACTA
                            aattaat  putative branch site (score: 3)
                                        ctctattttt  putative PPT
                  ttcattctataattaa  TA-rich tract