1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgccatattgttctcatttcttccttgtttctatttagtgtttattagaaagctgatctaacaagtataactttttcgtcttactgcctgtataaatgttactttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGGTCCAGCAGTTTGCTGATGCCATTGAAAGCTCATATTGGTTTGAATTTTT
species | Zea mays |
transcript | GRMZM2G420310_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGGEST: gi|211318943|gb|FL142494.1|FL142494
genomic: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgccata ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGG
EST: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGGEST: gi|211318946|gb|FL142497.1|FL142497
genomic: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgccata ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGG
EST: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCAEST: gi|211318942|gb|FL142493.1|FL142493
genomic: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgccata ... tttggtctagAAAACGTGGAGAAGGGCTTCA
EST: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGGEST: gi|160481321|gb|EY254485.1|EY254485
genomic: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgccata ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGG
EST: AATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAATGTGGAGAAGGGTTTCATTTGTACACTTGAGCTAGATGCTAAAAAGGEST: gi|78079180|gb|DV507592.1|DV507592
genomic: AATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgccata ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGG
EST: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGGEST: gi|31356502|gb|CD440859.1|CD440859
genomic: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgccata ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGG
EST: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGGEST: gi|71766500|gb|DR964437.1|DR964437
genomic: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgccata ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGG
EST: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGGEST: gi|89249564|gb|DY621350.1|DY621350
genomic: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgccata ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGG
EST: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGGEST: gi|160481319|gb|EY254483.1|EY254483
genomic: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgccata ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGG
EST: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGGEST: gi|29130633|gb|CB381337.1|CB381337
genomic: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgccata ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGG
EST: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGG
genomic: CCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgccata ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGG
ctaacaagtataactttttcgtcttactgcctgtataaatgttactttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGGTCCAGCAGTTTGCTGATGCCATTGAAAGCTCATATTGGTTTGAATTTTT
gtcttac putative branch site (score: 665)
ttacttt putative PPT
tataaatgttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccatattgttctcatttcttccttgtttctatttagtgtttattagaaagctgatctaacaagtataactttttcgtcttactgcctgtataaatgttactttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTAGATGCTAAAAAGGTCCAGCAGTTTGCTGATGCCATTGAAAGCTCATATTGGTTTGAATTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA