1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctcgtcaaccaatctacttgctggatttcatttatttgatgcaaattgacttgcaggaacttgtgatcttacctttacaatatattggtttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAGCAAAATAACATTCTTAAGCATTTGGAGAAAAAAGAGACTGAATATATG
species | Zea mays |
transcript | GRMZM2G375904_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAEST: gi|211067991|gb|FL145018.1|FL145018
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|149049840|gb|EE048527.2|EE048527
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211073467|gb|FL145044.1|FL145044
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211070726|gb|FL145028.1|FL145028
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|28873651|gb|CB329610.1|CB329610
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211067994|gb|FL145021.1|FL145021
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCCTGGATGTTGGAGAGAAAATTACAAGATGCCCGAAGEST: gi|149070121|gb|EE158521.2|EE158521
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGC-TGGATGTTGGAGAGAAAATTACAAGATGCC-GAAG
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211067990|gb|FL145017.1|FL145017
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATACGAAAGAGAG GCGCTGGATGTTGGAEST: gi|89250841|gb|DY622627.1|DY622627
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCCTGTAGAAGEST: gi|71765287|gb|DR963224.1|DR963224
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCC-TGTAGAAG
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGTTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTTCTGTAGAAGAEST: gi|211097010|gb|FL478910.1|FL478910
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211061362|gb|FL219436.1|FL219436
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211073466|gb|FL145043.1|FL145043
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211070727|gb|FL145029.1|FL145029
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAANGATGCCGAAGTTCCTGTANAAGEST: gi|211070738|gb|FL145040.1|FL145040
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAA-GATGCCGAAGTTCCTGTAGAAG
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|213183785|gb|FM191845.1|FM191845
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGANNNAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211073464|gb|FL145041.1|FL145041
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211073468|gb|FL145045.1|FL145045
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211067998|gb|FL145025.1|FL145025
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211070735|gb|FL145037.1|FL145037
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211070729|gb|FL145031.1|FL145031
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211070730|gb|FL145032.1|FL145032
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211067996|gb|FL145023.1|FL145023
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCCGAAGTTCCTGTAGAANEST: gi|211070736|gb|FL145038.1|FL145038
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCC-GAAGTTCCTGTAGAAG
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAEST: gi|211067989|gb|FL145016.1|FL145016
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTANAAGAEST: gi|211070725|gb|FL145027.1|FL145027
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGA
EST: AGAACCACTACAAGACCCAGNATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTTGGATGTTGGAGAGAAAATTACAAGATGCCCGAAGEST: gi|211067995|gb|FL145022.1|FL145022
genomic: AGAACCACTACAAGACCCAG-ATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCT-GGATGTTGGAGAGAAAATTACAAGATGCC-GAAG
EST: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAAATTACAAGNATGCCGAAGTTCCTGTANAAGEST: gi|211195287|gb|FK977678.1|FK977678
genomic: GAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAG-ATGCCGAAGTTCCTGTAGAAG
EST: AGAACCACTANCA-GACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAG GCGCTGGATGTTGGAGAGAAA-TTACAAGATGCCCGA-GTTCCTGTAGAAG
genomic: AGAACCACTA-CAAGACCCAGATGAAGTCCCTGCAAGATAGGAAAGAGAGgtaggcagtc ... ttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCC-GAAGTTCCTGTAGAAG
attgacttgcaggaacttgtgatcttacctttacaatatattggtttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAGCAAAATAACATTCTTAAGCATTTGGAGAAAAAAGAGACTGAATATATG
atcttac putative branch site (score: 853)
tttactttt putative PPT
tttacaatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcgtcaaccaatctacttgctggatttcatttatttgatgcaaattgacttgcaggaacttgtgatcttacctttacaatatattggtttacttttagGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAAGTTCCTGTAGAAGAGCAAAATAACATTCTTAAGCATTTGGAGAAAAAAGAGACTGAATATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA