1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgctgtatcaaaattctcggtgcctgttgggcctgctctgtgctatggattctgttgtcctgatgagcatgagctgtttgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAATGACTTGGATGTCCATGCATTGTTCAACAG
species | Zea mays |
transcript | GRMZM2G368908_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACG CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAEST: gi|88755238|gb|DY539379.1|DY539379
genomic: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACGgtatgctgta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACG CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAEST: gi|211358110|gb|FL397036.1|FL397036
genomic: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACGgtatgctgta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACG CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAASACTAAGGGAGEST: gi|71301807|gb|DR786975.1|DR786975
genomic: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACGgtatgctgta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAA-ACTAAGGGAG
EST: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACG CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAEST: gi|211163165|gb|FL410935.1|FL410935
genomic: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACGgtatgctgta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: TGACCACAATTATCATGAGTCCATGTTCTCCATGTTCAAGAGGATTAACG CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAGCTAAGGGAGAEST: gi|15208970|gb|BI430854.1|BI430854
genomic: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACGgtatgctgta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACG CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAEST: gi|20507024|gb|BQ279450.1|BQ279450
genomic: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACGgtatgctgta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACG CCAAGGAGCATGTTGCTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAEST: gi|148973687|gb|EE024808.2|EE024808
genomic: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACGgtatgctgta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACG CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAEST: gi|18964870|gb|BM661257.1|BM661257
genomic: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACGgtatgctgta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACG CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAEST: gi|22490364|gb|BU050287.1|BU050287
genomic: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACGgtatgctgta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACG CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAEST: gi|26456618|gb|CA828201.1|CA828201
genomic: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACGgtatgctgta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACG CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAEST: gi|211186910|gb|FL380819.1|FL380819
genomic: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACGgtatgctgta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGA
EST: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACG CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAG
genomic: TGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACGgtatgctgta ... tgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAG
tgctctgtgctatggattctgttgtcctgatgagcatgagctgtttgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAATGACTTGGATGTCCATGCATTGTTCAACAG
tcctgat putative branch site (score: 65)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctgtatcaaaattctcggtgcctgttgggcctgctctgtgctatggattctgttgtcctgatgagcatgagctgtttgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAATGACTTGGATGTCCATGCATTGTTCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA