1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtttggtttgcaaattggttcctctgtgtcttgacaagcttggatgggggacggggctctgatctagttcttcttcgtagGATGACCCGACGTGCGTGGCCGAGCGGGCGCAAGGGAAGAAGGTCGTCAGCGGGCTGTGGGTGGAGGACAGCTTGGATCGCGGGGTGCTTGCTGATGCCG
species | Zea mays |
transcript | GRMZM2G317487_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCCGTCGGGCAACGGGTGCACACACGTGGTCGTGTGGAACCGCATCTAC GATGACCCGACGTGCGTGGCCGAGCGGGCGCAAGGGAAGAAGGTCGTCAGCEST: gi|211272671|gb|FL118184.1|FL118184
genomic: GGCCGTCGGGCAACGGGTGCACACACGTGGTCGTGTGGAACCGCATCTACgtgagtttgg ... ttcttcgtagGATGACCCGACGTGCGTGGCCGAGCGGGCGCAAGGGAAGAAGGTCGTCAGC
EST: GCCGTCGGGCAACGGGTGCACACACGTGGTCGTGTGGGAACCGCATCTAC GATGACCCGACGTGCGTGGCCGAGCGGGCGCAATGGGAAGAAGGTCGTCAG
genomic: GCCGTCGGGCAACGGGTGCACACACGTGGTCGTGTGG-AACCGCATCTACgtgagtttgg ... ttcttcgtagGATGACCCGACGTGCGTGGCCGAGCGGGCGCAA-GGGAAGAAGGTCGTCAG
gtgtcttgacaagcttggatgggggacggggctctgatctagttcttcttcgtagGATGACCCGACGTGCGTGGCCGAGCGGGCGCAAGGGAAGAAGGTCGTCAGCGGGCTGTGGGTGGAGGACAGCTTGGATCGCGGGGTGCTTGCTGATGCCG
tctagttcttcttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttggtttgcaaattggttcctctgtgtcttgacaagcttggatgggggacggggctctgatctagttcttcttcgtagGATGACCCGACGTGCGTGGCCGAGCGGGCGCAAGGGAAGAAGGTCGTCAGCGGGCTGTGGGTGGAGGACAGCTTGGATCGCGGGGTGCTTGCTGATGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT