1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgcctatctgcacaatcgtatttcatcgcctccccacgggatcacgcgataccatctctccgagcttgtgcgaatgttgattcgaatgcattcgagggctcacaaaatgaggtgtggtttctcatgttttcttcatgtatctgcagGTTATCACCAAGCTCCTGTACCTGCTCAACCAGGGTGATACCTTTACCAAG
species | Zea mays |
transcript | GRMZM2G178618_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCCCGAGTCTTCCATGACCCTCAGCTCGACGCGCGGCGATGCTGCCAG GTTATCACCAAGCTCCTGTACCTGCTCAACCAGGGTGATACCTTTACCAAGEST: gi|148931355|gb|EC874250.2|EC874250
genomic: AGGCCCGAGTCTTCCATGACCCTCAGCTCGACGCGCGGCGATGCTGCCAGgtgcctatct ... gtatctgcagGTTATCACCAAGCTCCTGTACCTGCTCAACCAGGGTGATACCTTTACCAAG
EST: AGGCCCGAGTCTTCCATGACCCTCAGCTCGACGCGCGGCGATGCTGCCAG GTTATCACCAAGCTCCTGTACCTGCTCAACCAGGGTGATACCTTTACCAAGEST: gi|74235981|gb|DT643895.1|DT643895
genomic: AGGCCCGAGTCTTCCATGACCCTCAGCTCGACGCGCGGCGATGCTGCCAGgtgcctatct ... gtatctgcagGTTATCACCAAGCTCCTGTACCTGCTCAACCAGGGTGATACCTTTACCAAG
EST: AGGCCCGAGTCTTCCATGACCCTCAGCTCGACGCGCGGCGATGCTGCCAG GTTATCACCAAGCTCCTGTACCTGCTCAACCAGGGTGATACCTTTACCAAG
genomic: AGGCCCGAGTCTTCCATGACCCTCAGCTCGACGCGCGGCGATGCTGCCAGgtgcctatct ... gtatctgcagGTTATCACCAAGCTCCTGTACCTGCTCAACCAGGGTGATACCTTTACCAAG
tcgagggctcacaaaatgaggtgtggtttctcatgttttcttcatgtatctgcagGTTATCACCAAGCTCCTGTACCTGCTCAACCAGGGTGATACCTTTACCAAG
ggctcac putative branch site (score: 307)
acaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctatctgcacaatcgtatttcatcgcctccccacgggatcacgcgataccatctctccgagcttgtgcgaatgttgattcgaatgcattcgagggctcacaaaatgaggtgtggtttctcatgttttcttcatgtatctgcagGTTATCACCAAGCTCCTGTACCTGCTCAACCAGGGTGATACCTTTACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT