1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgtacgttgccagtcaggttgtgttcggagtgcaggcccccccggctatgctgctcactcacgcgctcccgtgccgtgcagGCTGCAGGACGTCGTGCACAACGACAAGTGCATCTACCTCGTCTTCGAGTACCTCGACCTCGACCTCAAGAAGCACATGGACTCCTCCACGGACTTCAAG
species | Zea mays |
transcript | GRMZM2G174596_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCCGCGAGATCTCCCTCCTCAAGGAGATGCAGCACCGCAACATCGTCAG GCTGCAGGACGTCGTGCACAACGACAAGTGCATCTACCTCGTCTTCGAGTAEST: gi|6166634|gb|AW144898.1|AW144898
genomic: ATCCGCGAGATCTCCCTCCTCAAGGAGATGCAGCACCGCAACATCGTCAGgtacgtacgt ... tgccgtgcagGCTGCAGGACGTCGTGCACAACGACAAGTGCATCTACCTCGTCTTCGAGTA
EST: ATCCGCGAGATCTCCCTCCTCAAGGAGATGCAGCACCGCAACATCGTCAG GCTGCAGGACGTCGTGCACAACGACAAGTGCATCTACCTCGTCTTCGAGTAEST: gi|88752963|gb|DY537104.1|DY537104
genomic: ATCCGCGAGATCTCCCTCCTCAAGGAGATGCAGCACCGCAACATCGTCAGgtacgtacgt ... tgccgtgcagGCTGCAGGACGTCGTGCACAACGACAAGTGCATCTACCTCGTCTTCGAGTA
EST: ATCCGCGAGATCTCCCTCCTCAAGGAGATGCAGCACCGCAACATCGTCAG GCTGCAGGACGTCGTGCACAACGACAAGTGCATCTACCTCGTCTTCGAGTAEST: gi|78103919|gb|DV522337.1|DV522337
genomic: ATCCGCGAGATCTCCCTCCTCAAGGAGATGCAGCACCGCAACATCGTCAGgtacgtacgt ... tgccgtgcagGCTGCAGGACGTCGTGCACAACGACAAGTGCATCTACCTCGTCTTCGAGTA
EST: ATCCGCGAGATCTCCCTCCTCAAGGAGATGCAGCACCGCAACATCGTCAG GCTGCAGGACGTCGTGCACAACGACAAGTGCATCTACCTCGTCTTCGAGTA
genomic: ATCCGCGAGATCTCCCTCCTCAAGGAGATGCAGCACCGCAACATCGTCAGgtacgtacgt ... tgccgtgcagGCTGCAGGACGTCGTGCACAACGACAAGTGCATCTACCTCGTCTTCGAGTA
ggagtgcaggcccccccggctatgctgctcactcacgcgctcccgtgccgtgcagGCTGCAGGACGTCGTGCACAACGACAAGTGCATCTACCTCGTCTTCGAGTACCTCGACCTCGACCTCAAGAAGCACATGGACTCCTCCACGGACTTCAAG
cactcac putative branch site (score: 2)
ctcccgt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtacgttgccagtcaggttgtgttcggagtgcaggcccccccggctatgctgctcactcacgcgctcccgtgccgtgcagGCTGCAGGACGTCGTGCACAACGACAAGTGCATCTACCTCGTCTTCGAGTACCTCGACCTCGACCTCAAGAAGCACATGGACTCCTCCACGGACTTCAAG
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