1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgcacactattttcttcttctgtgtacctgttgattgtaagttaaccatttccctggtaagttctcctaattaaatgctcctttgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGAAAA
species | Zea mays |
transcript | GRMZM2G174170_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAG AGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGAEST: gi|211352916|gb|FL033077.1|FL033077
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGA
EST: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAG AGCAATGTGAGAGGGAGAEST: gi|71299488|gb|DR785755.1|DR785755
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGA
EST: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAG AGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGAEST: gi|211352911|gb|FL033072.1|FL033072
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGA
EST: CCTTCAAGARGACAAGACTCTGCCGTTTGATGATGCAA-C-AGTTTCTAG AGCAATGTGAGAGGGAGAAAGCACGAGTEST: gi|91875180|gb|EB405137.1|EB405137
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGT
EST: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAG AGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGAEST: gi|149112681|gb|EE295513.2|EE295513
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGA
EST: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAG AGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGAEST: gi|211350512|gb|FL033069.1|FL033069
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGA
EST: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAG AGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGAEST: gi|71314755|gb|DR794000.1|DR794000
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGA
EST: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAG AGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGAEST: gi|78111707|gb|DV530104.1|DV530104
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGA
EST: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAG AGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGAEST: gi|211350508|gb|FL033065.1|FL033065
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGA
EST: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAG AGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATGGCATGTCTGGGAEST: gi|78107086|gb|DV525504.1|DV525504
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGA
EST: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAG AGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGAEST: gi|71301897|gb|DR787018.1|DR787018
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGA
EST: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAG AGCAATGTGAGAGGGAGAAAGCACGAGTCTTAGTCCATTGCATGCCTGGGAEST: gi|211352915|gb|FL033076.1|FL033076
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGA
EST: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAG AGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATGGCATGTCTGGGAEST: gi|211350511|gb|FL033068.1|FL033068
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGA
EST: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAG AGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGA
genomic: CCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacac ... tgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGA
aagttaaccatttccctggtaagttctcctaattaaatgctcctttgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGAAAA
tcctaat putative branch site (score: 7)
tgctccttt putative PPT
taattaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcacactattttcttcttctgtgtacctgttgattgtaagttaaccatttccctggtaagttctcctaattaaatgctcctttgaacttcagAGCAATGTGAGAGGGAGAAAGCACGAGTCCTAGTCCATTGCATGTCTGGGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA