1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...attctagaaacaagggcatttccattccaatacaaaatcttaggattttgatggtggctgaaaatattaggattttgaattttggtgcatgtccttgcagGCATGTGTTCTTCCTGCCCCCAGGAGATCTTTTTGTGGCAATTATGCCAGAGTCGTGAATCAAATTTTGCAAGGCCTGACCAATATGCAT
species | Zea mays |
transcript | GRMZM2G169927_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTCACGCTGAAGCAGGAGATTGCGTGGGCGTCTCACGTCTCGTTGCAG GCATGTGTTCTTCCTGCCCCCAGGAGATCTTTTTGTGGCAATTATGCCAGAEST: gi|31354779|gb|CD439136.1|CD439136
genomic: AGCTCACGCTGAAGCAGGAGATTGCGTGGGCGTCTCACGTCTCGTTGCAGgtccactcgt ... gtccttgcagGCATGTGTTCTTCCTGCCCCCAGGAGATCTTTTTGTGGCAATTATGCCAGA
EST: AGCTCACGCTGAAGCAGGAGATTGCGTGGGCGTCTCACGTCTCGCTGCAG GCATGTGTTCTTCCTGCCCCCAGGAGATCTTTTTGTGGCAATTATGCCAGAEST: gi|71772935|gb|DR970858.1|DR970858
genomic: AGCTCACGCTGAAGCAGGAGATTGCGTGGGCGTCTCACGTCTCGTTGCAGgtccactcgt ... gtccttgcagGCATGTGTTCTTCCTGCCCCCAGGAGATCTTTTTGTGGCAATTATGCCAGA
EST: AGCTCACGCTGAAGCAGGAGATTGCGTGGGCGTCTCACGTCTCGTTGCAG GCATGTGTTCTTCCTGCCCCCAGGAGATCTTTTTGTGGCAATTATGCCAGA
genomic: AGCTCACGCTGAAGCAGGAGATTGCGTGGGCGTCTCACGTCTCGTTGCAGgtccactcgt ... gtccttgcagGCATGTGTTCTTCCTGCCCCCAGGAGATCTTTTTGTGGCAATTATGCCAGA
ttttgatggtggctgaaaatattaggattttgaattttggtgcatgtccttgcagGCATGTGTTCTTCCTGCCCCCAGGAGATCTTTTTGTGGCAATTATGCCAGAGTCGTGAATCAAATTTTGCAAGGCCTGACCAATATGCAT
ttttgat putative branch site (score: 4)
tgtcctt putative PPT
aaaatattaggatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctagaaacaagggcatttccattccaatacaaaatcttaggattttgatggtggctgaaaatattaggattttgaattttggtgcatgtccttgcagGCATGTGTTCTTCCTGCCCCCAGGAGATCTTTTTGTGGCAATTATGCCAGAGTCGTGAATCAAATTTTGCAAGGCCTGACCAATATGCAT
- - - -aaacaag
- - - - - - - - - - -ccattcc
- - - - - - - - - - - - - - -atacaaa
- - - - - - - - - - - - - - - - - - - - - - - tttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgca