1 5' 3' | 2 5' 3' |
...taaaagaccattgattttggtatagtctagagagttgttttgctatcttctttgcaaattacaaaagcataagcattcatattcatatcatttcgtgtagAGCTCCCAGAAAAGGAAGTTGAAATTCAAGAAGTGGTTCCTGAAGAGGAGTCTGCTCCAGTGTTGTAGATCCAGTGGTGGAGTCCCATCTAACTGTAGAA
species | Zea mays |
transcript | GRMZM2G164902_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tcttctttgcaaattacaaaagcataagcattcatattcatatcatttcgtgtagAGCTCCCAGAAAAGGAAGTTGAAATTCAAGAAGTGGTTCCTGAAGAGGAGTCTGCTCCAGTGTTGTAGATCCAGTGGTGGAGTCCCATCTAACTGTAGAA
tcatttc CT-rich tract
atattcatatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaagaccattgattttggtatagtctagagagttgttttgctatcttctttgcaaattacaaaagcataagcattcatattcatatcatttcgtgtagAGCTCCCAGAAAAGGAAGTTGAAATTCAAGAAGTGGTTCCTGAAGAGGAGTCTGCTCCAGTGTTGTAGATCCAGTGGTGGAGTCCCATCTAACTGTAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
-aaaagacc
- - - - - - - ttttggt
- - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatat