1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggttccctgcgaaatgggggcttcgtggcgtagcattgctttccatggaaatttgatgcccaaatgctaaaaaaatgtgttatcttgcggttgggtgcagGTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCACCCGTTGATCTTTGCTGCTTTGTACAAGACCCTGGCGCTACTCCATCTG
species | Zea mays |
transcript | GRMZM2G164175_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGAGACTCCAGTGCCCCTGCTAGCCTGCCCTCTGGTTTTGTGTTAAGTG GTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCA
genomic: CGGAGACTCCAGTGCCCCTGCTAGCCTGCCCTCTGGTTTTGTGTTAAGTGgtaagtgcta ... ttgggtgcagGTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCA
tggaaatttgatgcccaaatgctaaaaaaatgtgttatcttgcggttgggtgcagGTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCACCCGTTGATCTTTGCTGCTTTGTACAAGACCCTGGCGCTACTCCATCTG
tgctaaa putative branch site (score: 3)
taaaaaaatgtgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttccctgcgaaatgggggcttcgtggcgtagcattgctttccatggaaatttgatgcccaaatgctaaaaaaatgtgttatcttgcggttgggtgcagGTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCACCCGTTGATCTTTGCTGCTTTGTACAAGACCCTGGCGCTACTCCATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- -tccctgc
- - - - - - - - - - - - - - - - - - tgctttc
- - - - - - - - - - - - - - - - - - - - - -catggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa