1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cccacaattataattgttcaatatatgtatgcattatacttctcagttctgttagcttattgaattatgtgggtgaagttttttccttcatgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGACCATCAGTAAAATTTCTAGTTAATGCTG
species | Zea mays |
transcript | GRMZM2G160458_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|148946148|gb|EC891442.2|EC891442
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|148996317|gb|EE035601.2|EE035601
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|211395866|gb|FL418052.1|FL418052
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTAACCTTEST: gi|50323762|gb|CO518888.1|CO518888
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTA-CCTT
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|211153699|gb|FL418636.1|FL418636
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|211049012|gb|FL423466.1|FL423466
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAANACAGAACGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|211130983|gb|FL371912.1|FL371912
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAEST: gi|211364314|gb|FL429339.1|FL429339
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|211491477|gb|FL425970.1|FL425970
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGEST: gi|71301915|gb|DR787034.1|DR787034
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGG
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|50326773|gb|CO521899.1|CO521899
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|211527534|gb|FL409937.1|FL409937
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTEST: gi|78089924|gb|DV518298.1|DV518298
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTT
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|9952850|gb|BE639433.1|BE639433
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|71429926|gb|DR810976.1|DR810976
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|148939576|gb|EC884188.2|EC884188
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|211204300|gb|FL385169.1|FL385169
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|211204896|gb|FL411811.1|FL411811
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGMGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|211002651|gb|FL371731.1|FL371731
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|149070866|gb|EE159275.2|EE159275
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|32842309|gb|CD981990.1|CD981990
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGTCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|50332851|gb|CO527977.1|CO527977
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|71426064|gb|DR807114.1|DR807114
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGAEST: gi|33468120|gb|CF245169.1|CF245169
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
EST: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAG TGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
genomic: TGAACGAGCTCCTTGAGCTCAGGAGCTGCTCCAGCTGCCTTTTCTTCGAGgtatagatct ... tgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGA
gttctgttagcttattgaattatgtgggtgaagttttttccttcatgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGACCATCAGTAAAATTTCTAGTTAATGCTG
ttttttccttcatgt CT-rich tract
ttattgaattatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccacaattataattgttcaatatatgtatgcattatacttctcagttctgttagcttattgaattatgtgggtgaagttttttccttcatgtattacagTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGACCATCAGTAAAATTTCTAGTTAATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
cccacaa
- - - - - - - - - - - - -tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - ttctgtt