Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatgaggcctaatatagagatcatcattgtgatctcaatatagtttgttgaacaaggcattcctgtttatgctaaacatacataatgacattttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG

Basic information

species Zea mays
transcript GRMZM2G159397_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159397_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g41950.2 (Oryza sativa), 3'ss of exon 2
ttatgaggcctaatatagagatcatcattgtgatctcaatatagtttgttgaacaaggcattcctgtttat---gctaaacatacataatgacattt-tttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG
   ||| |   |   |    |    || | || | |  | ||| | |  |  ||| |   || |     ||     |||   |  |  ||    ||| ||||||||| |||||  |||||||||||| |||||||||||||||||| | ||||| |||||||| |||||||||||
---tgaaggagatggtttgcaattgcaatatgttatatacata-tgtcctacacatgcattttcaaaacatcgaattaatggtcaactattttgtttctttcagCAATTGAAAGCTAGCCGCAATGAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAG

upper sequence: GRMZM2G159397_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g41950.1 (Oryza sativa), 3'ss of exon 3
ttatgaggcctaatatagagatcatcattgtgatctcaatatagtttgttgaacaaggcattcctgtttat---gctaaacatacataatgacattt-tttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG----
   ||| |   |   |    |    || | || | |  | ||| | |  |  ||| |   || |     ||     |||   |  |  ||    ||| ||||||||| |||||  |||||||||||| |||||||||||||||||| | ||||| |||||||| |||||||||||    
---tgaaggagatggtttgcaattgcaatatgttatatacata-tgtcctacacatgcattttcaaaacatcgaattaatggtcaactattttgtttctttcagCAATTGAAAGCTAGCCGCAATGAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAGGCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241219|gb|DT649133.1|DT649133
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|78180034|gb|DV550407.1|DV550407
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|211229521|gb|FL030113.1|FL030113
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|211012495|gb|FL323158.1|FL323158
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|211402407|gb|FL354728.1|FL354728
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGT
EST: gi|211333883|gb|FL365382.1|FL365382
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAAGTAGCCG
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAA-GTAGCCG
EST: gi|148949380|gb|EC894836.2|EC894836
EST:     TTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: TTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|76284475|gb|DV024043.1|DV024043
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|6918768|gb|AW400298.1|AW400298
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|211231580|gb|FL030120.1|FL030120
EST:     AATGCAGTTTTNCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|211509214|gb|FL030119.1|FL030119
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCMCGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|50338646|gb|CO533772.1|CO533772
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACG
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACG
EST: gi|211509212|gb|FL030117.1|FL030117
EST:     AATGCAGTTTTNCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACT
EST: gi|93282622|gb|EB674886.1|EB674886
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|67042829|gb|CO469084.1|CO469084
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|50338493|gb|CO533619.1|CO533619
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|67010834|gb|CO439583.1|CO439583
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|71772521|gb|DR970452.1|DR970452
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|88756808|gb|DY540949.1|DY540949
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCCCAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|89247844|gb|DY619630.1|DY619630
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGANAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|148951163|gb|EC896843.2|EC896843
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|74236154|gb|DT644068.1|DT644068
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAGACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|211509213|gb|FL030118.1|FL030118
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTG
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTG
EST: gi|50338759|gb|CO533885.1|CO533885
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|211010839|gb|FL363376.1|FL363376
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGT
EST: gi|149078371|gb|EE167144.2|EE167144
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|6918466|gb|AW399996.1|AW399996
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|109637403|gb|EC590948.1|EC590948
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGGAAGGCACGTGCTTG
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTG-AAGGCACGTG-TTG
EST: gi|78093002|gb|DV521376.1|DV521376
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|148951164|gb|EC896844.2|EC896844
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|78093003|gb|DV521377.1|DV521377
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|71757422|gb|DR955359.1|DR955359
EST:     AATGCAGTTTTGCAGGGCGTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|67010653|gb|CO439402.1|CO439402
EST:     AATGCAGTTTTGCAGGGCCTG-AACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|50338891|gb|CO534017.1|CO534017
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|211028753|gb|FL344465.1|FL344465
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAG
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAG
EST: gi|211301782|gb|FL325999.1|FL325999
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTAC
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTAC
EST: gi|32867990|gb|CF007672.1|CF007672
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CGACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|109179245|gb|EC379888.1|EC379888
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|149098430|gb|EE184409.2|EE184409
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|149077648|gb|EE166352.2|EE166352
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|149105410|gb|EE290922.2|EE290922
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|78111103|gb|DV529500.1|DV529500
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|67029631|gb|CO458380.1|CO458380
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|148995802|gb|EE035033.2|EE035033
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|211267567|gb|FL336180.1|FL336180
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAANCTGAAGGCACGTGTTGA
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAA-CTGAAGGCACGTGTTGA
EST: gi|211229522|gb|FL030114.1|FL030114
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAA
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAA
EST: gi|67017342|gb|CO446091.1|CO446091
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|149105409|gb|EE290921.2|EE290921
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|76019607|gb|DT946777.1|DT946777
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|62525802|gb|DN828450.1|DN828450
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|50338644|gb|CO533770.1|CO533770
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|32866045|gb|CF005727.1|CF005727
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|149081319|gb|EE170433.2|EE170433
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|76291287|gb|DV030855.1|DV030855
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|149098431|gb|EE184410.2|EE184410
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|91874357|gb|EB404314.1|EB404314
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|148931272|gb|EC874097.2|EC874097
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAGAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|148995435|gb|EE034634.2|EE034634
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|211058485|gb|FL335136.1|FL335136
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTA
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTA
EST: gi|148950935|gb|EC896570.2|EC896570
EST:     CAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: CAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|211229523|gb|FL030115.1|FL030115
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|148950936|gb|EC896571.2|EC896571
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|149110047|gb|EE293860.2|EE293860
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|67019373|gb|CO448122.1|CO448122
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|67010697|gb|CO439446.1|CO439446
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|88757755|gb|DY541896.1|DY541896
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|71757423|gb|DR955360.1|DR955360
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|211112421|gb|FL337494.1|FL337494
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|50338743|gb|CO533869.1|CO533869
EST:     AATGCACTTTTGCAGGGCCTGAAACAGCACTCCATAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|149078369|gb|EE167143.2|EE167143
EST:     A-GCCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: ATG-CAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|37426267|gb|CF650885.1|CF650885
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|108824286|gb|EC278294.1|EC278294
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|67026224|gb|CO454973.1|CO454973
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|108953949|gb|EC364944.1|EC364944
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|148949381|gb|EC894837.2|EC894837
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|67013405|gb|CO442154.1|CO442154
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
EST: gi|6127229|gb|AW129875.1|AW129875
EST:     AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG                         CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT
genomic: AATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 459

CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG


Block sizes: 33 (upstream exon), 41 (downstream exon)
Score: 7

CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG


Block sizes: 36 (upstream exon), 43 (downstream exon)
Score: 5

CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 693

CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAGgtaagatctt ... attttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgaacaaggcattcctgtttatgctaaacatacataatgacattttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG
                         tgctaaa  putative branch site (score: 693)
                                            cattttttc  putative PPT
                                     ataatgacatttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttatgaggcctaatatagagatcatcattgtgatctcaatatagtttgttgaacaaggcattcctgtttatgctaaacatacataatgacattttttcagCAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG