1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttctgatctttagatgcaaacttaagatacccctttacatgattcagtttgctttagtgctcactgaataataacgtaagatcttaattccagTGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCATATGATGAAGCTCAGTCATATGCAAAATTGCGTTGCCAGCAGGAAGGCC
species | Zea mays |
transcript | GRMZM2G155323_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAG TGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCAEST: gi|22546336|gb|BU098647.1|BU098647
genomic: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAGgtttctgatc ... ttaattccagTGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCA
EST: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAG TGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCAEST: gi|60338910|gb|DN205883.1|DN205883
genomic: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAGgtttctgatc ... ttaattccagTGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCA
EST: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAG TGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCAEST: gi|22472274|gb|BU036754.1|BU036754
genomic: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAGgtttctgatc ... ttaattccagTGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCA
EST: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAG TGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCAEST: gi|50324583|gb|CO519709.1|CO519709
genomic: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAGgtttctgatc ... ttaattccagTGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCA
EST: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAG TGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCAEST: gi|60397382|gb|DN230198.1|DN230198
genomic: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAGgtttctgatc ... ttaattccagTGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCA
EST: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAG TGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTEST: gi|60354060|gb|DN221033.1|DN221033
genomic: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAGgtttctgatc ... ttaattccagTGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTT
EST: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAG TGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCAEST: gi|87156844|gb|DY401633.1|DY401633
genomic: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAGgtttctgatc ... ttaattccagTGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCA
EST: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAG TGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCA
genomic: TGGGATGTGATGCTGTCATCGTCATGCCCGTGACAACACCAGAAATCAAGgtttctgatc ... ttaattccagTGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCA
atgattcagtttgctttagtgctcactgaataataacgtaagatcttaattccagTGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCATATGATGAAGCTCAGTCATATGCAAAATTGCGTTGCCAGCAGGAAGGCC
tgaataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctgatctttagatgcaaacttaagatacccctttacatgattcagtttgctttagtgctcactgaataataacgtaagatcttaattccagTGGAAATCAGTGGAGAGGTTGGGTGCAACAGTGGTCCTTGAGGGGGACTCATATGATGAAGCTCAGTCATATGCAAAATTGCGTTGCCAGCAGGAAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA