1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgctagggtccagtttttatttctggctgatgttgctttcgatactaccaattgcccacttttttgtcttcgtcaggcagttgaattatgttacttaaagACTTGTTCTACAGGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAAGTGCAAAGTCAGCAACCAAACCCGATGACCACTGAT
species | Zea mays |
transcript | GRMZM2G154221_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAA-G-------G A----TTCT-CAGGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAEST: gi|78118653|gb|DV537037.1|DV537037
genomic: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAGgtgagtttgc ... ttacttaaagACTTGTTCTACAGGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACA
EST: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAA-G-------G A----TTCT-CAGGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAEST: gi|78084282|gb|DV512675.1|DV512675
genomic: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAGgtgagtttgc ... ttacttaaagACTTGTTCTACAGGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACA
EST: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAA-G-------G A----TTCT-CAGGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAEST: gi|33467119|gb|CF244168.1|CF244168
genomic: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAGgtgagtttgc ... ttacttaaagACTTGTTCTACAGGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACA
EST: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAA-G-------G A----TTCT-CAGGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACA
genomic: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAGgtgagtttgc ... ttacttaaagACTTGTTCTACAGGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACA
taccaattgcccacttttttgtcttcgtcaggcagttgaattatgttacttaaagACTTGTTCTACAGGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAAGTGCAAAGTCAGCAACCAAACCCGATGACCACTGAT
aattatgttacttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctagggtccagtttttatttctggctgatgttgctttcgatactaccaattgcccacttttttgtcttcgtcaggcagttgaattatgttacttaaagACTTGTTCTACAGGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAAGTGCAAAGTCAGCAACCAAACCCGATGACCACTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
tgctagg
- - - - - - - - - - - - -gctgatg
- - - - - - - - - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagttg