Sequence
atgc intronic sequence ATGC exonic sequencegtaaacccgtccgtccgtccatccatctatccatccatccagcagcaggaacaaatttaccacaagacgtctggaaatcaccggccacaaagacgtctggagatctgcatctgctaacaacgttttctctccctttttttccccagCCGTTCAAAGACATGGTCCAAGGAATGAGGCTGGACCTGTGGAAGTCGAGGTACATGACCTTCGACGAGCTCTACCTCTACTGCTACTACGTCGCCGGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G149317_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os12g43130.1 (Oryza sativa), 3'ss of exon 3
gtaaacccgtccgtccgtccatccatctatccatccatccagcagcaggaacaaatttaccacaagacgtctggaaatcaccggccacaaagacgtctggagatctgcatctgctaacaacgttttctct-------ccctttttttccccagCCGTTCAAAGACATGGTCCAAGGAATGAGGCTGGACCTGTGGAAGTCGAGGTACATGACCTTCGACGAGCTCTACCTCTACTGCTACTACGTCGCCGGCA
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--------------------gtacagccaacaaaaaagcta-ctgtaaaagcaggata--tgaagtgcttttaaaagttattagt-acacagtaaattggtgacacgcatttgtctgatgtttctgcaccgtcgggatctcttttatttacagCCATTCAAAGACATGATTGAAGGAATGAGGCTTGACCTGTGGAAATCAAGGTATAGGAGCTTTGATGAGCTCTACCTCTACTGCTACTACGTTGCTGGCA
upper sequence: GRMZM2G149317_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA14G03500.1 (Glycine max), 3'ss of exon 3
gtaaacccgtccgtccgtccatccatctatccatccatccagcagcaggaacaaatttaccacaagacgtctggaaatcaccggccacaaagacgtctggagatctgcatctgctaacaacgttttctctccctttttttccccagCCGTTCAAAGACATGGTCCAAGGAATGAGGCTGGACCTGTGGAAGTCGAGGTACATGACCTTCGACGAGCTCTACCTCTACTGCTACTACGTCGCCGGCA
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--------------------------------------gcacctatgcaaattggtc-atcttatacagaatagatttcacct-tcttttttatgtgctaaaa-ctgatccaaatggcattgcattgtct-----ttttgaaacagCCCTTCAAGGACATGATCGAAGGGATGAGGGTGGACCTGAGAAAGTCAAGATACAATAACTTTGATGAGCTCTACCTTTACTGCTACTATGTTGCTGGGA
upper sequence: GRMZM2G149317_T03 (Zea mays), 3'ss of exon 2
lower sequence: EFJ16279 (Selaginella moellendorffii), 3'ss of exon 3
gtaaacccgtccgtccgtccatccatctatccatccatccagcagcaggaacaaatttaccacaagacgtctggaaatcaccggccacaaagacgtctggagatctgcatctgctaacaacgttttctctccctttttttccccagCCGTTCAAAGACATGGTCCAAGGAATGAGGCTGGACCTGTGGAAGTCGAGGTACATGACCTTCGACGAGCTCTACCTCTACTGCTACTACGTCGCCGGCA
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-----------------------------------------------------------------------------gtattctaaagacatttctcttgcggatattatatgctgatca----ttccttcgaatcgttcatgcagCCGTTCCGGGACATGATAGAAGGCATGCGACTGGATCTGGTAAAGTCGAGGTACAAAAATTTTGACGAGCTTTACCTGTATTGCTACTACGTCGCCGGCA
upper sequence: GRMZM2G149317_T03 (Zea mays), 3'ss of exon 2
lower sequence: EFJ17751 (Selaginella moellendorffii), 3'ss of exon 3
gtaaacccgtccgtccgtccatccatctatccatccatccagcagcaggaacaaatttaccacaagacgtctggaaatcaccggccacaaagacgtctggagatctgcatctgctaacaacgttttctctccctttttttccccagCCGTTCAAAGACATGGTCCAAGGAATGAGGCTGGACCTGTGGAAGTCGAGGTACATGACCTTCGACGAGCTCTACCTCTACTGCTACTACGTCGCCGGCA
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-------------------------------------------------------------------------gtattctaaagacac---ttctcttgcggatat-tatatgctgatca----ttccttcgaatcgttcatgcagCCGTTCCGGGACATGATAGAAGGCATGCGACTGGATCTGGTAAAGTCGAGGTACAAAAATTTTGACGAGCTTTACCTGTATTGCTACTACGTCGCCGGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|1531735|gb|AA051885.1|AA051885EST: ACGACGCCGCGCTCTCGGACACTGTGTCCAAGTTCCCCGTCGATATCCAG CCGTTCAAAGACATGGTCCAAGGAATGAGGCTGGACCTGTGGAAGTCGAGG
genomic: ACGACGCCGCGCTCTCGGACACTGTGTCCAAGTTCCCCGTCGATATCCAGgtaaacccgt ... ttttccccagCCGTTCAAAGACATGGTCCAAGGAATGAGGCTGGACCTGTGGAAGTCGAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gacgtctggagatctgcatctgctaacaacgttttctctccctttttttccccagCCGTTCAAAGACATGGTCCAAGGAATGAGGCTGGACCTGTGGAAGTCGAGGTACATGACCTTCGACGAGCTCTACCTCTACTGCTACTACGTCGCCGGCA
tgctaac putative branch site (score: 1)
caacgttttctctccc CT-rich tract
ttttttt TA-rich tract