Sequence
atgc intronic sequence ATGC exonic sequence...acttgtcgaatgttgatgattatgttgtcgaatgttgatgattatgcgccattctatgtcactaagaattgttacctatgtggcacatttgtggttgcagCTATCAGGAGATTTTGACAGATCCAAGCTATGCTGGTCAATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G147450_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g47850.3 (Oryza sativa), 3'ss of exon 3
-----------------------------------------------------------------acttgtcga-atgttgatgatta-tgttgtcgaat-gttgatgattatgcgccattctatgtcactaagaattgttacctatgtggcacatttgtggttgcagCTATCAGGAGATTTTGACAGATCCAAGCTATGCTGGTCAATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTG
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gtaaatcaactaaccgtttgagtgatggcatttgtttcctgttgtggttgagatgtgcttattgttcttcctgatagagaaacaactaacctcatcaaatagttgagacgcgcgtactgcttattgacaacaggaaaca--actaacctcat-caaatg-ggctgcagGTATCAAGAGATTTTGACTGATCCAAGCTATGCTGGTCAATTTGTCCTCATGACCAACCCACATATTGGAAACACTGGTGTTAATCCTG
upper sequence: GRMZM2G147450_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA06G15510.3 (Glycine max), 3'ss of exon 2
------acttgtcgaatgttgatgattatgttgtcgaatgttgatgattatgcgc-cattctatgtcactaagaattgttacctat-gtggcacatttgtggttg-cagCTATCAGGAGATTTTGACAGATCCAAGCTATGCTGGTCAATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTG
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gtgaggatactatgaatcttgggatgcgtgttctt-----tttttggttttgcttgcatgctaaatgagtggttggttttctttgttgtgttgtgtgtgtgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG
upper sequence: GRMZM2G147450_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G32190.1 (Glycine max), 3'ss of exon 2
acttgtcgaatgttgatgattatgttgtcgaatgttgatg-attatgcgccattctatgtcactaagaattgttacctatgtggca-catttgt-ggttgcagCTATCAGGAGATTTTGACAGATCCAAGCTATGCTGGTCAATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTG
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gtgagatgaac-taactttatatataaaccggcattcattcaatctgagcatggatataccgatgtttcat-ttgtttatttaataatatctgttaactgcagGTATCAAGAAATTCTAACAGATCCTAGTTATGCTGGTCAGTTTGTACTGATGACAAATCCACATATTGGTAACACTGGTGTAAATTTTG
upper sequence: GRMZM2G147450_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv04s0044g00550.t01 (Vitis vinifera), 3'ss of exon 2
-----------acttgtcgaatgttgatgattatgttgtcgaatgttgatgattatgcgccattctatgtcactaagaattgttacctatgtggcacatttgtggttgcagCTATCAGGAGATTTTGACAGATCCAAGCTATGCTGGTCAATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTG
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tggctctgcttatctgcaaagttaaaatgacctgattgagga--gttgat-attttgt-tcatgatccatatatggaagttgatatgtggttgtcata-------ttgcagATATCAGGAAATTCTTACAGACCCTAGTTATGCTGGTCAGTTCGTCTTAATGACAAATCCACATATTGGCAACACGGGGGTAAATTTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74245056|gb|DT652970.1|DT652970EST: GCATCAGGAACACAAGTCGGTGAAGTTGTTTTCAACACATCACTGACAGG CTATCAGGAGATTTTGACAGATCCAAGCTATGCTGGTCAATTTGTCCTGAT
genomic: GCATCAGGAACACAAGTCGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaagtcatt ... gtggttgcagCTATCAGGAGATTTTGACAGATCCAAGCTATGCTGGTCAATTTGTCCTGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcgccattctatgtcactaagaattgttacctatgtggcacatttgtggttgcagCTATCAGGAGATTTTGACAGATCCAAGCTATGCTGGTCAATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTG
taagaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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acttgtcgaatgttgatgattatgttgtcgaatgttgatgattatgcgccattctatgtcactaagaattgttacctatgtggcacatttgtggttgcagCTATCAGGAGATTTTGACAGATCCAAGCTATGCTGGTCAATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTG
- - - - - tgttgat
- - - - - - - - - - -atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacatt