1 5' 3' | 2 5' 3' | 3 5' 3' |
...agctgctgagtatttctgtcgtgcttgtgagaatcttggtgatatctcatgtgctgctgtactgggatcttttatgtatttatttattgtatcttatcagGTCAGGGATGAAATAGAACATCTTCTAGATGATAATGAAGACATGGAACATCTGTATCTAACAAGGAAGCAAGTACAAAACCAACAGGTTGAGGCTTTAA
species | Zea mays |
transcript | GRMZM2G145794_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCGGAACCTTAAGAGTCATCTTACCCGTTTGCTTGCCCGTGTGCAAAAG GTCAGGGATGAAATAGAACATCTTCTAGATGATAATGAAGACATGGAACATEST: gi|76292915|gb|DV032483.1|DV032483
genomic: TGCGGAACCTTAAGAGTCATCTTACCCGTTTGCTTGCCCGTGTGCAAAAGgtatcattaa ... atcttatcagGTCAGGGATGAAATAGAACATCTTCTAGATGATAATGAAGACATGGAACAT
EST: TGCGGAACCTTAAGAGTCATCTTACCCGTTTGCTTGCCCGTGTGCAAAAG GTCAGGGATGAAATAGAACATCTTCTAGATGATAATGAAGACATGGAACATEST: gi|88747345|gb|DY531486.1|DY531486
genomic: TGCGGAACCTTAAGAGTCATCTTACCCGTTTGCTTGCCCGTGTGCAAAAGgtatcattaa ... atcttatcagGTCAGGGATGAAATAGAACATCTTCTAGATGATAATGAAGACATGGAACAT
EST: GTTTGCTTGCCCGTGTGCAAAAG GTCAGGGATGAAATAGAACATCTTCTAGATGATAATGAAGACATGGAACAT
genomic: GTTTGCTTGCCCGTGTGCAAAAGgtatcattaa ... atcttatcagGTCAGGGATGAAATAGAACATCTTCTAGATGATAATGAAGACATGGAACAT
ctcatgtgctgctgtactgggatcttttatgtatttatttattgtatcttatcagGTCAGGGATGAAATAGAACATCTTCTAGATGATAATGAAGACATGGAACATCTGTATCTAACAAGGAAGCAAGTACAAAACCAACAGGTTGAGGCTTTAA
tcttatc CT-rich tract
atcttttatgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctgctgagtatttctgtcgtgcttgtgagaatcttggtgatatctcatgtgctgctgtactgggatcttttatgtatttatttattgtatcttatcagGTCAGGGATGAAATAGAACATCTTCTAGATGATAATGAAGACATGGAACATCTGTATCTAACAAGGAAGCAAGTACAAAACCAACAGGTTGAGGCTTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
-gctgctg
- - - - - - - - - - -tgcttgt
- - - - - - - - - - - - - - - - - - tggtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactggg