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gtaagtcaccccctccttttttttcttccttgggtcatagtcaggattagagctatgctgatgtgctgccttcccagGTTCAACCTTGTGTTGGTGTTTGGAGTGATAAGTGCCGTTCAAAGTATGGGAGGAGAAGACCATTTATTTTGGCTGGATGCATAATGATATGTGCTGCT
species | Zea mays |
transcript | GRMZM2G145107_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTG GTTCAACCTTGTGTTGGTGTTTGGAGTGATAAGTGCCGTTCAAAGTATGGGEST: gi|93282781|gb|EB675045.1|EB675045
genomic: ATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTGgtaagtcacc ... gccttcccagGTTCAACCTTGTGTTGGTGTTTGGAGTGATAAGTGCCGTTCAAAGTATGGG
EST: ATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTG GTTCAACCTTGTGTTGGTGTTTGGAGTGATAAGTGCCGTTCAAAGTATGGGEST: gi|93284115|gb|EB676379.1|EB676379
genomic: ATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTGgtaagtcacc ... gccttcccagGTTCAACCTTGTGTTGGTGTTTGGAGTGATAAGTGCCGTTCAAAGTATGGG
EST: ATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTG GTTCAACCTTGTGTTGGTGTTTGGAGTGATAAGTGCCGTTCAAAGTATGGGEST: gi|19855127|gb|BQ060179.1|BQ060179
genomic: ATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTGgtaagtcacc ... gccttcccagGTTCAACCTTGTGTTGGTGTTTGGAGTGATAAGTGCCGTTCAAAGTATGGG
EST: ATGCCATGGCACCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTG GTTCAACCTTGTGTTGGTGTTTGGAGTGATAAGTGCCGTTCGAAGTATGGGEST: gi|78078077|gb|DV506492.1|DV506492
genomic: ATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTGgtaagtcacc ... gccttcccagGTTCAACCTTGTGTTGGTGTTTGGAGTGATAAGTGCCGTTCAAAGTATGGG
EST: ATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTG GTTCAACCTTGTGTTGGTGTTTGGAGTGATAAGTGCCGTTCAAAGTATGGGEST: gi|149104737|gb|EE290188.2|EE290188
genomic: ATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTGgtaagtcacc ... gccttcccagGTTCAACCTTGTGTTGGTGTTTGGAGTGATAAGTGCCGTTCAAAGTATGGG
EST: ATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGGTTTGGG GTTCAACCTTGTGTTGGTGT
genomic: ATGCCATGGCATCATTTATTTGGCTGTGTGGGCCTATAACTGGTTTTGTGgtaagtcacc ... gccttcccagGTTCAACCTTGTGTTGGTGT
ttcttccttgggtcatagtcaggattagagctatgctgatgtgctgccttcccagGTTCAACCTTGTGTTGGTGTTTGGAGTGATAAGTGCCGTTCAAAGTATGGGAGGAGAAGACCATTTATTTTGGCTGGATGCATAATGATATGTGCTGCT
tgctgat putative branch site (score: 110)
ctgccttccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcaccccctccttttttttcttccttgggtcatagtcaggattagagctatgctgatgtgctgccttcccagGTTCAACCTTGTGTTGGTGTTTGGAGTGATAAGTGCCGTTCAAAGTATGGGAGGAGAAGACCATTTATTTTGGCTGGATGCATAATGATATGTGCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT