1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgactctatgttctgtgactgtgttacccgtagaacatattactgacataactccttttcttttgaagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTTGATGAGGCAGGGGCCTGGAAAAGCAAGCTTCAGGCTGAATCAAGGGAGC
species | Zea mays |
transcript | GRMZM2G143862_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTTEST: gi|32932722|gb|CF037534.1|CF037534
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttgactct ... tcttttgaagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTT
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTTEST: gi|211507302|gb|FK969869.1|FK969869
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttgactct ... tcttttgaagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTT
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTTEST: gi|67015451|gb|CO444200.1|CO444200
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttgactct ... tcttttgaagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTT
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTTEST: gi|211182047|gb|FL030523.1|FL030523
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttgactct ... tcttttgaagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTT
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTTEST: gi|211507300|gb|FK969867.1|FK969867
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttgactct ... tcttttgaagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTT
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTTEST: gi|32930610|gb|CF035422.1|CF035422
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttgactct ... tcttttgaagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTT
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTTEST: gi|211507306|gb|FK969873.1|FK969873
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttgactct ... tcttttgaagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTT
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTT
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttgactct ... tcttttgaagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTT
tgtgactgtgttacccgtagaacatattactgacataactccttttcttttgaagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTTGATGAGGCAGGGGCCTGGAAAAGCAAGCTTCAGGCTGAATCAAGGGAGC
taactccttttctttt CT-rich tract
aacatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgactctatgttctgtgactgtgttacccgtagaacatattactgacataactccttttcttttgaagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTAGCACATGATGTTGTTGATGAGGCAGGGGCCTGGAAAAGCAAGCTTCAGGCTGAATCAAGGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT