1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatcaactgtggtacgagttccatatgctagagggttaggggcaaatgatactgtattaactacatgtataccttatgttaatccttgatgctaccccagGTCTGTGTCTATTGTTTATACCACGGTCGGGGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTT
species | Zea mays |
transcript | GRMZM2G138053_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGAACCTCAAAGGGTCCAAGAACGAGGAGCTCCACGTTGCCTCCCACAA GTCTGTGTCTATTGTTTATACCACGGTCGGGGATGTCTGCCTCTACATTGTEST: gi|4885897|gb|AI677017.1|AI677017
genomic: GAGAACCTCAAAGGGTCCAAGAACGAGGAGCTCCACGTTGCCTCCCACAAgtacgtttca ... gctaccccagGTCTGTGTCTATTGTTTATACCACGGTCGGGGATGTCTGCCTCTACATTGT
EST: GAGAACCTCAAAGGGTCCAAGAACGAGGAGCTCCACGTTGCCTCCCACAA GTCTGTGTCTATTGTTTATACCACGGTCGGGGATGTCTGCCTCTACATTGT
genomic: GAGAACCTCAAAGGGTCCAAGAACGAGGAGCTCCACGTTGCCTCCCACAAgtacgtttca ... gctaccccagGTCTGTGTCTATTGTTTATACCACGGTCGGGGATGTCTGCCTCTACATTGT
atgatactgtattaactacatgtataccttatgttaatccttgatgctaccccagGTCTGTGTCTATTGTTTATACCACGGTCGGGGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTT
ctacccc CT-rich tract
ttatgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcaactgtggtacgagttccatatgctagagggttaggggcaaatgatactgtattaactacatgtataccttatgttaatccttgatgctaccccagGTCTGTGTCTATTGTTTATACCACGGTCGGGGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - -catatgc
- - - - - - - - - - - - - - - - - - - - - - - -gatactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgtt