1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaaatgctagaaatgcatgtgagatgtgactctggctgtgggttgctgattgttctgttaattattctgagccattataaagacaagttcatgtattcagGTGGGAAGACTGAAACCAGAGAAGGCTATCCCTGATACTATTCTTAGACAAGCAAAAGGTCTTGCTATTGTTACTGTGGTGAAGGTTGGGATGATGGTTA
species | Zea mays |
transcript | GRMZM2G128608_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAATATGAAATATACAAGGCCACGAATTCTTTACGTAATTACTATAAG GTGGGAAGACTGAAACCAGAGAAGGCTATCCCTGATACTATTCTTAGACAAEST: gi|33098610|gb|CF058570.1|CF058570
genomic: TGGAATATGAAATATACAAGGCCACGAATTCTTTACGTAATTACTATAAGgtatgccctt ... atgtattcagGTGGGAAGACTGAAACCAGAGAAGGCTATCCCTGATACTATTCTTAGACAA
EST: TGGAATATGAAATATACAAGGCCACGAATTCTTTACGTAATTACTATAAG GTGGGAAGACTGAAACCAGAGAAGGCTATCCCTGATACTATTCTTAGACAA
genomic: TGGAATATGAAATATACAAGGCCACGAATTCTTTACGTAATTACTATAAGgtatgccctt ... atgtattcagGTGGGAAGACTGAAACCAGAGAAGGCTATCCCTGATACTATTCTTAGACAA
ctgattgttctgttaattattctgagccattataaagacaagttcatgtattcagGTGGGAAGACTGAAACCAGAGAAGGCTATCCCTGATACTATTCTTAGACAAGCAAAAGGTCTTGCTATTGTTACTGTGGTGAAGGTTGGGATGATGGTTA
tgttaat putative branch site (score: 53)
ttctgttaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatgctagaaatgcatgtgagatgtgactctggctgtgggttgctgattgttctgttaattattctgagccattataaagacaagttcatgtattcagGTGGGAAGACTGAAACCAGAGAAGGCTATCCCTGATACTATTCTTAGACAAGCAAAAGGTCTTGCTATTGTTACTGTGGTGAAGGTTGGGATGATGGTTA
- - - - - - -tgcatgt
- - - - - - - - - - - - - - - - -ggctgtg
- - - - - - - - - - - - - - - - - - - - -gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagacaa