1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...caaccttgcgaattgctttttaaccaagcaaacaatgccctatttttactgctttcaatacgatccgttcattttcgtttgtattcaaattatggtgcagGATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATCATGTCCAAGATCATGACACGAAATCCTGTTTATGTGATGTCTGACACGC
species | Zea mays |
transcript | GRMZM2G126656_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAG GATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATCEST: gi|71304764|gb|DR788496.1|DR788496
genomic: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAGgtgacctctc ... tatggtgcagGATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATC
EST: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAG GATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATCEST: gi|211362912|gb|FL253415.1|FL253415
genomic: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAGgtgacctctc ... tatggtgcagGATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATC
EST: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAG GATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATCEST: gi|78078047|gb|DV506462.1|DV506462
genomic: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAGgtgacctctc ... tatggtgcagGATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATC
EST: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAG GATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATCEST: gi|78086694|gb|DV515087.1|DV515087
genomic: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAGgtgacctctc ... tatggtgcagGATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATC
EST: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAG GATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATCEST: gi|30704520|gb|CD058548.1|CD058548
genomic: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAGgtgacctctc ... tatggtgcagGATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATC
EST: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAG GATATAGCTACAAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATEST: gi|71766059|gb|DR963996.1|DR963996
genomic: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAGgtgacctctc ... tatggtgcagGATATAGCTAC-AAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCAT
EST: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAG GATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATCEST: gi|148949419|gb|EC894878.2|EC894878
genomic: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAGgtgacctctc ... tatggtgcagGATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATC
EST: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAG GATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATC
genomic: TGCTGCTCACCGACAACCAAGGGCTCCTCTCCGGCATAGTCACCGACAAGgtgacctctc ... tatggtgcagGATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATC
ttactgctttcaatacgatccgttcattttcgtttgtattcaaattatggtgcagGATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATCATGTCCAAGATCATGACACGAAATCCTGTTTATGTGATGTCTGACACGC
tttgtattcaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaccttgcgaattgctttttaaccaagcaaacaatgccctatttttactgctttcaatacgatccgttcattttcgtttgtattcaaattatggtgcagGATATAGCTACAAGGGTGGTTGCTGAGGGGCTTAGGGTGGAGCAAACCATCATGTCCAAGATCATGACACGAAATCCTGTTTATGTGATGTCTGACACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - -tgctttt
- - - - - - - - - - - - caagcaa
- - - - - - - - - - - - - - - - - -tgcccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcattt