1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcgtgcaactggctcagtgtgatggatggatcgtttcttatgttcgtcttgcctctgcggcgtctgattgaatggctgcgtgtgcccgtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGATCGGTTGCTGCTACGAGAGCGGCGAGCGTCTCCTCGTCGCCGAGTTCA
species | Zea mays |
transcript | GRMZM2G121826_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGANGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCEST: gi|149103589|gb|EE288989.2|EE288989
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGC
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|71772711|gb|DR970638.1|DR970638
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|71302365|gb|DR787300.1|DR787300
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|50338612|gb|CO533738.1|CO533738
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|91055451|gb|EB165869.1|EB165869
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|211493009|gb|FL369794.1|FL369794
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|67034938|gb|CO463471.1|CO463471
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|149012049|gb|EE042465.2|EE042465
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|149102733|gb|EE188271.2|EE188271
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|211227820|gb|FL399533.1|FL399533
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|9255138|gb|BE345606.1|BE345606
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTEST: gi|211332705|gb|FL418379.1|FL418379
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGT
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGNTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCAAATCTGEST: gi|18659368|gb|BM500301.1|BM500301
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|71327655|gb|DR800438.1|DR800438
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|71299876|gb|DR785964.1|DR785964
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|148982427|gb|EE028311.2|EE028311
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|149036971|gb|EE155209.2|EE155209
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|211443081|gb|FL371156.1|FL371156
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGEST: gi|148945740|gb|EC891020.2|EC891020
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
EST: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTG GAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
genomic: CCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaa ... gtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTG
ttcgtcttgcctctgcggcgtctgattgaatggctgcgtgtgcccgtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGATCGGTTGCTGCTACGAGAGCGGCGAGCGTCTCCTCGTCGCCGAGTTCA
gtctgat putative branch site (score: 4)
attgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgcaactggctcagtgtgatggatggatcgtttcttatgttcgtcttgcctctgcggcgtctgattgaatggctgcgtgtgcccgtgggtgcagGAGGAGGCGAGGGCTGTTGGGCAGCTGCGCAGTCGCCGGCTGGCCAATCTGATCGGTTGCTGCTACGAGAGCGGCGAGCGTCTCCTCGTCGCCGAGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
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