1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tacagtttatcaagcatactaactgttgcagatacttgaaggcctggatatgtagacatttatttaataaattttagttcccctttataaccatttgaagGCTAGGACGCACATCTGAATTCATAATCTACGGACATGGACAGCAACGAAGGGCGCTTATTGAGACAGAGCGCCTTTTGGAAAATGACAAAAATAATGGT
species | Zea mays |
transcript | GRMZM2G121427_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCACATTTCACTCATTTTGCTTGCAGCTTTGCAGAACACATGCTGAAAA GCTAGGACGCACATCTGAATTCATAATCTACGGACATGGACAGCAACGAAGEST: gi|26456962|gb|CA828545.1|CA828545
genomic: AGCACATTTCACTCATTTTGCTTGCAGCTTTGCAGAACACATGCTGAAAAgtatgttttc ... ccatttgaagGCTAGGACGCACATCTGAATTCATAATCTACGGACATGGACAGCAACGAAG
EST: AGCACATTTCACTCATTTTGCTTGCAGCTTTGCAGAACACATGCTGAAAA GCTAGGACGCACATCTGAATTCATAATCTACGGACATGGACAGCAACGAAG
genomic: AGCACATTTCACTCATTTTGCTTGCAGCTTTGCAGAACACATGCTGAAAAgtatgttttc ... ccatttgaagGCTAGGACGCACATCTGAATTCATAATCTACGGACATGGACAGCAACGAAG
ggatatgtagacatttatttaataaattttagttcccctttataaccatttgaagGCTAGGACGCACATCTGAATTCATAATCTACGGACATGGACAGCAACGAAGGGCGCTTATTGAGACAGAGCGCCTTTTGGAAAATGACAAAAATAATGGT
ttataac putative branch site (score: 9)
tgtagacatttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacagtttatcaagcatactaactgttgcagatacttgaaggcctggatatgtagacatttatttaataaattttagttcccctttataaccatttgaagGCTAGGACGCACATCTGAATTCATAATCTACGGACATGGACAGCAACGAAGGGCGCTTATTGAGACAGAGCGCCTTTTGGAAAATGACAAAAATAATGGT
- - - - - - -gcatact
- - - - - - - - - - - ctgttgc
- - - - - - - - - - - - - - - - - - - - -gcctgga