1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttattatgtatatttggataaaaggggggcattttaaagtttttttttgtatgtctagttgtggttatgttcattatttcatttggtttctttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATGGAACAAGCAACTATTCAGTGCCTCGGTTGTCTCAAGTCAAAAATACCT
species | Zea mays |
transcript | GRMZM2G118467_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATEST: gi|31355095|gb|CD439452.1|CD439452
genomic: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
EST: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATEST: gi|5268397|gb|AI770361.1|AI770361
genomic: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
EST: GCGG-ACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
genomic: GCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
tttgtatgtctagttgtggttatgttcattatttcatttggtttctttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATGGAACAAGCAACTATTCAGTGCCTCGGTTGTCTCAAGTCAAAAATACCT
tttggtttctttctt CT-rich tract
ttatgttcattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattatgtatatttggataaaaggggggcattttaaagtttttttttgtatgtctagttgtggttatgttcattatttcatttggtttctttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATGGAACAAGCAACTATTCAGTGCCTCGGTTGTCTCAAGTCAAAAATACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA