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gtttgtgagacgaggtgcacgcgtttgttggatgccaaaatattcttacctgatcggcgttgttggttctgtggcttcagGAGCCTCTCAAGCTGGACTTTGTCATTAGCTTTCCGGACCATGGATTTCACCTACGCTTTGATCCTTGGTCCCAG
species | Zea mays |
transcript | GRMZM2G116434_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCGGCAGCCGAATATCTACGACGTTGTCCACGTGAAATACTTCGACGAG GAGCCTCTCAAGCTGGACTTTGTCATTAGCTTTCCGGACCATGGATTTCACEST: gi|78106231|gb|DV524649.1|DV524649
genomic: AGCGGCAGCCGAATATCTACGACGTTGTCCACGTGAAATACTTCGACGAGgtttgtgaga ... gtggcttcagGAGCCTCTCAAGCTGGACTTTGTCATTAGCTTTCCGGACCATGGATTTCAC
EST: AGCGGCAGCCGAATATCTACGACGTTGTCCACGTGAAATACTTCGACGAG GAGCCTCTCAAGCTGGACTTTGTCATTAGCTTTCCGGACCATGGATTTCAC
genomic: AGCGGCAGCCGAATATCTACGACGTTGTCCACGTGAAATACTTCGACGAGgtttgtgaga ... gtggcttcagGAGCCTCTCAAGCTGGACTTTGTCATTAGCTTTCCGGACCATGGATTTCAC
tgttggatgccaaaatattcttacctgatcggcgttgttggttctgtggcttcagGAGCCTCTCAAGCTGGACTTTGTCATTAGCTTTCCGGACCATGGATTTCACCTACGCTTTGATCCTTGGTCCCAG
aaaatattctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgagacgaggtgcacgcgtttgttggatgccaaaatattcttacctgatcggcgttgttggttctgtggcttcagGAGCCTCTCAAGCTGGACTTTGTCATTAGCTTTCCGGACCATGGATTTCACCTACGCTTTGATCCTTGGTCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA