1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aactggatttttcctgtttttctatttctggttacttcttaaagaattaagtctgatggcgtgctaagattgattgctcccttattattaattatttcagGTTTTTGTGAGGGATTTCGTTCCGAGCGCATTGGCTTTTCTAATGAACAATGAGACTGACATAGTGAAGAATTTTCTCTTGAAAACTCTTCACCTTCAGA
species | Zea mays |
transcript | GRMZM2G115451_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCATTGCTGCCGTCGATCATGCGTCGGAGGAAGTGCTCAACTATGATCAG GTTTTTGTGAGGGATTTCGTTCCGAGCGCATTGGCTTTTCTAATGAACAATEST: gi|78087480|gb|DV515873.1|DV515873
genomic: CCATTGCTGCCGTCGATCATGCGTCGGAGGAAGTGCTCAACTATGATCAGgtaaattatt ... attatttcagGTTTTTGTGAGGGATTTCGTTCCGAGCGCATTGGCTTTTCTAATGAACAAT
EST: CCATTGCTGCCGTCGATCATGCGTCGGAGGAAGTGCTCAACTATGATCAG GTTTTTGTGAGGGATTTCGTTCCGAGCGCATTGGCTTTTCTAATGAACAAT
genomic: CCATTGCTGCCGTCGATCATGCGTCGGAGGAAGTGCTCAACTATGATCAGgtaaattatt ... attatttcagGTTTTTGTGAGGGATTTCGTTCCGAGCGCATTGGCTTTTCTAATGAACAAT
attaagtctgatggcgtgctaagattgattgctcccttattattaattatttcagGTTTTTGTGAGGGATTTCGTTCCGAGCGCATTGGCTTTTCTAATGAACAATGAGACTGACATAGTGAAGAATTTTCTCTTGAAAACTCTTCACCTTCAGA
tattaat putative branch site (score: 2)
ttatttc CT-rich tract
ttattattaattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactggatttttcctgtttttctatttctggttacttcttaaagaattaagtctgatggcgtgctaagattgattgctcccttattattaattatttcagGTTTTTGTGAGGGATTTCGTTCCGAGCGCATTGGCTTTTCTAATGAACAATGAGACTGACATAGTGAAGAATTTTCTCTTGAAAACTCTTCACCTTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - -ctgtttt
- - - - - - - - - - - - -ttctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgg