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...tttttgtcttgatcccatatttagcaaaaccaagtaattcaacctttttggggcaaaatctttactgacttccatgataatgagaacaactcattttcagAATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCAAAGAAAGCAAGGATTCAGATGTTTTCCCCTGCGGAGGGGGTGCCAGATA
species | Zea mays |
transcript | GRMZM2G111510_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAG AATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCAEST: gi|211319408|gb|FL056110.1|FL056110
genomic: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAGgtatgcgccc ... tcattttcagAATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCA
EST: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAG AATCATAAAAGAGACEST: gi|74242081|gb|DT649995.1|DT649995
genomic: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAGgtatgcgccc ... tcattttcagAATCATAAAAGAGAC
EST: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAG AATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCAEST: gi|33095039|gb|CF055033.1|CF055033
genomic: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAGgtatgcgccc ... tcattttcagAATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCA
EST: GACCATGATCGTGCGGAATTGCGGGAACTAGAGAAG AATCATAAAAGAGCCAATACTGCAGTCAGCCCTCCGGAGGAACAACGTTCAEST: gi|91053261|gb|EB163679.1|EB163679
genomic: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAGgtatgcgccc ... tcattttcagAATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCA
EST: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAG AATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCAEST: gi|71432126|gb|DR813176.1|DR813176
genomic: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAGgtatgcgccc ... tcattttcagAATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCA
EST: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAG AATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCAEST: gi|71316665|gb|DR795007.1|DR795007
genomic: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAGgtatgcgccc ... tcattttcagAATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCA
EST: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAG AATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCAEST: gi|28984330|gb|BQ538995.2|BQ538995
genomic: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAGgtatgcgccc ... tcattttcagAATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCA
EST: GACCCATGATCGTGCGGAATTGCGAGAACTAGAGAAG AATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCAEST: gi|211319405|gb|FL056107.1|FL056107
genomic: GA-CCATGATCGTGCGGAATTGCGAGAACTAGAGAAGgtatgcgccc ... tcattttcagAATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCA
EST: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAG AATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCA
genomic: GACCATGATCGTGCGGAATTGCGAGAACTAGAGAAGgtatgcgccc ... tcattttcagAATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCA
ttttggggcaaaatctttactgacttccatgataatgagaacaactcattttcagAATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCAAAGAAAGCAAGGATTCAGATGTTTTCCCCTGCGGAGGGGGTGCCAGATA
tactgac putative branch site (score: 19)
ctcattttc putative PPT
aaaatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgtcttgatcccatatttagcaaaaccaagtaattcaacctttttggggcaaaatctttactgacttccatgataatgagaacaactcattttcagAATCATAAAAGAGACAATACTGCAGTCAGCCCTCCGGAGGAACAACGTCCAAAGAAAGCAAGGATTCAGATGTTTTCCCCTGCGGAGGGGGTGCCAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - aaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaac