1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acgggatttctttcttctctagaactaagttttgggtgttccttttttttcatgacgttgacttactctgttgcattgcgctcttccttgctaaaactagATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAGACTACACAAAG
species | Zea mays |
transcript | GRMZM2G102161_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAA ATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAGEST: gi|32847423|gb|CD987104.1|CD987104
genomic: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAAgtaagtgtac ... ctaaaactagATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAG
EST: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAA ATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAGEST: gi|32847744|gb|CD987425.1|CD987425
genomic: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAAgtaagtgtac ... ctaaaactagATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAG
EST: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAA ATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAGEST: gi|211336947|gb|FL070178.1|FL070178
genomic: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAAgtaagtgtac ... ctaaaactagATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAG
EST: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAA ATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAGEST: gi|32845819|gb|CD985500.1|CD985500
genomic: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAAgtaagtgtac ... ctaaaactagATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAG
EST: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAA ATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAGEST: gi|211334796|gb|FL070174.1|FL070174
genomic: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAAgtaagtgtac ... ctaaaactagATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAG
EST: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAA ATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAGEST: gi|211408737|gb|FL193400.1|FL193400
genomic: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAAgtaagtgtac ... ctaaaactagATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAG
EST: ACTGGAGAGTGAA ATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAGEST: gi|211336950|gb|FL070181.1|FL070181
genomic: ACTGGAGAGTGAAgtaagtgtac ... ctaaaactagATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAG
EST: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAA ATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAGEST: gi|32866292|gb|CF005974.1|CF005974
genomic: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAAgtaagtgtac ... ctaaaactagATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAG
EST: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAA ATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAGEST: gi|32847872|gb|CD987553.1|CD987553
genomic: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAAgtaagtgtac ... ctaaaactagATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAG
EST: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAA ATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAG
genomic: GCAGCTCCAACTACAGCACACAGGAAGTAAAAGCTCCACTGGAGAGTGAAgtaagtgtac ... ctaaaactagATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAG
tttttcatgacgttgacttactctgttgcattgcgctcttccttgctaaaactagATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAGACTACACAAAG
tgctaaa putative branch site (score: 140)
cgctcttccttgct CT-rich tract
taaaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgggatttctttcttctctagaactaagttttgggtgttccttttttttcatgacgttgacttactctgttgcattgcgctcttccttgctaaaactagATTAACTACCAGGACTACTTGAAGTTGAGGACCAGAGTTGATTTTCTCCAGACTACACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - -gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgc