1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaaccataaacagaagctgacattttcttatctgctgtggtaattgaatatatgggatctgataacaaattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG
species | Zea mays |
transcript | GRMZM2G102021_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211177675|gb|FL258734.1|FL258734
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211177674|gb|FL258733.1|FL258733
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211177670|gb|FL258729.1|FL258729
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|22546043|gb|BU098364.1|BU098364
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211287765|gb|FL258742.1|FL258742
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTAC-A--A- GAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|91876597|gb|EB406554.1|EB406554
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTAC-A--A- GAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211287768|gb|FL258745.1|FL258745
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211177673|gb|FL258732.1|FL258732
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211177668|gb|FL258727.1|FL258727
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211177671|gb|FL258730.1|FL258730
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|87156122|gb|DY400911.1|DY400911
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211177672|gb|FL258731.1|FL258731
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211177676|gb|FL258735.1|FL258735
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211287764|gb|FL258741.1|FL258741
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|148946111|gb|EC891405.2|EC891405
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TTTGGATGCTTTACAAGTAG AEST: gi|148946111|gb|EC891405.2|EC891405
genomic: TTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccag-
EST: TTTGGATGCTTTACAAGTAG AEST: gi|211177678|gb|FL258737.1|FL258737
genomic: TTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccag-
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCCAAGCCACGEST: gi|211287771|gb|FL258748.1|FL258748
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|26559868|gb|CA832103.1|CA832103
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211287767|gb|FL258744.1|FL258744
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|22818908|gb|BU498998.1|BU498998
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|149048871|gb|EE048372.2|EE048372
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTAC-A--A- GAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211177679|gb|FL258738.1|FL258738
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211177677|gb|FL258736.1|FL258736
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|148946112|gb|EC891406.2|EC891406
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAG GAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|40336955|gb|CK371025.1|CK371025
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|87155707|gb|DY400496.1|DY400496
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|37395770|gb|CF635168.1|CF635168
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTAC-A--A- GAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211287770|gb|FL258747.1|FL258747
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211287769|gb|FL258746.1|FL258746
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211105119|gb|FL057785.1|FL057785
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|211177681|gb|FL258740.1|FL258740
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAG-A- -AAA-TGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGEST: gi|33285553|gb|CF075348.1|CF075348
genomic: TCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
EST: GAAGGCACTCGTCTTGTGTTTTGGATGCTTTAC-A--A- GAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
genomic: GAAGGCACTCGTCTTGTGTTTTGGATGCTTTACAAGTAGgtaaaccata ... aattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACG
ttttcttatctgctgtggtaattgaatatatgggatctgataacaaattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG
tgataac putative branch site (score: 2)
ttttcc putative PPT
taattgaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaccataaacagaagctgacattttcttatctgctgtggtaattgaatatatgggatctgataacaaattttccagGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT