1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gatatgttgggcatttggtgaagatgtgaaaagcgtgctcgtttttcctttttaactttgacctaaaattcatttgcttcaataccatattaccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATATCGCTTGGTTTACTCCCGTGGAGCTCTTTAAG
species | Zea mays |
transcript | GRMZM2G101217_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGGCCGGTGGGCGTTCTTGACGC-AGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|50336106|gb|CO531232.1|CO531232
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|50325602|gb|CO520728.1|CO520728
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|211153475|gb|FL406036.1|FL406036
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|211057983|gb|FL426573.1|FL426573
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|211269212|gb|FL410574.1|FL410574
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|211209580|gb|FL394645.1|FL394645
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|89250708|gb|DY622494.1|DY622494
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTTGATAAGCTGTATAAGAAGCATGATEST: gi|211491486|gb|FL425979.1|FL425979
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTT-GATAAGCTGTATAAGAAGCATGAT
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|50337135|gb|CO532261.1|CO532261
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|101391071|gb|EB817469.1|EB817469
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|19436955|gb|BM953365.1|BM953365
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|37417541|gb|CF646424.1|CF646424
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|76924073|gb|DV169790.1|DV169790
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|93012540|gb|EB638060.1|EB638060
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|211063350|gb|FL405207.1|FL405207
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|211197467|gb|FL425782.1|FL425782
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|71418854|gb|DR804568.1|DR804568
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|211511752|gb|FL412067.1|FL412067
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATAEST: gi|211164475|gb|FL391064.1|FL391064
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATA
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGANGCATGATAEST: gi|211428747|gb|FL388358.1|FL388358
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATREST: gi|211524044|gb|FL387968.1|FL387968
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGAT-
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|148959299|gb|EE010710.2|EE010710
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|211079207|gb|FL387329.1|FL387329
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|71312573|gb|DR792811.1|DR792811
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|211209713|gb|FL401773.1|FL401773
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGGCCGGTGGGCGTTCTTGACGC-AGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGANGCATGATAEST: gi|211054342|gb|FL401189.1|FL401189
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGGCCGGTGGGCGTTCTTGACGC-AGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|211428657|gb|FL384948.1|FL384948
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGCCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGGATAAGAAGCATGATEST: gi|211463727|gb|FL386698.1|FL386698
genomic: GACC-GGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGA-GGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGAT
EST: GGGGCCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|148960597|gb|EE011219.2|EE011219
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|211085712|gb|FL420035.1|FL420035
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGGCCGGTGGGCGTTCTTGACG-CAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|93012306|gb|EB637826.1|EB637826
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|71303088|gb|DR787655.1|DR787655
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|71327533|gb|DR800378.1|DR800378
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATAEST: gi|76281532|gb|DV021100.1|DV021100
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
EST: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGG GGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
genomic: GGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCAACCAGCTCGAGGgtggtctcct ... taccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATA
tcctttttaactttgacctaaaattcatttgcttcaataccatattaccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATATCGCTTGGTTTACTCCCGTGGAGCTCTTTAAG
taaaattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatgttgggcatttggtgaagatgtgaaaagcgtgctcgtttttcctttttaactttgacctaaaattcatttgcttcaataccatattaccatgtagGGAGGAGTGCATATATACAGCACCTTGATAAGCTGTATAAGAAGCATGATATCGCTTGGTTTACTCCCGTGGAGCTCTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT