1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtgccctccatccttctttcgtcgccatgagaagactaatgttggcaactgttctcgtattcatcgtttccctcggtttcctggaccactgtgctttgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGAGATCAACGGCGAGGCCAAAAAAGAGGAGCCTCCAATTGTGCTGAAGCCT
species | Zea mays |
transcript | GRMZM2G098714_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGTCGTC-AAGGCAAAGATGACAA AGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGAEST: gi|211341515|gb|FL063181.1|FL063181
genomic: ACGTCGTCAAAGGCAAAGATGACAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGA
EST: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAA AGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGEST: gi|29945007|gb|CB815421.1|CB815421
genomic: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCG
EST: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAA AGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGAEST: gi|211339122|gb|FL063170.1|FL063170
genomic: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGA
EST: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAA AGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGAEST: gi|211343901|gb|FL063190.1|FL063190
genomic: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGA
EST: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAA AGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGAEST: gi|211343898|gb|FL063187.1|FL063187
genomic: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGA
EST: TCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGANCAA AGTCTTGGTTGTCATCAAATGCNGAGCTTGTGTGCCAAGCGCTTGACGCCEST: gi|5555566|gb|AI881517.1|AI881517
genomic: TCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGA-CAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGC-GAGCTTGTGTGCCAAGCGCTTGACGCC
EST: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAA AGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGAEST: gi|211343899|gb|FL063188.1|FL063188
genomic: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGA
EST: TCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGNACAA AGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGEST: gi|211343902|gb|FL063191.1|FL063191
genomic: TCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATG-ACAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCG
EST: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAA AGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGAEST: gi|211343905|gb|FL063194.1|FL063194
genomic: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGA
EST: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAA AGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGAEST: gi|29945326|gb|CB815583.1|CB815583
genomic: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGA
EST: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAA AGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGAEST: gi|71438959|gb|DR820009.1|DR820009
genomic: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGA
EST: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAA AGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGAEST: gi|5268729|gb|AI770693.1|AI770693
genomic: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGA
EST: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAA AGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGAEST: gi|211341513|gb|FL063179.1|FL063179
genomic: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGA
EST: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAA AGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGA
genomic: ATCCGCATCATCGACTACACTTGCAACGTCGTCAAAGGCAAAGATGACAAgtaagtgccc ... tgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGA
ttctcgtattcatcgtttccctcggtttcctggaccactgtgctttgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGAGATCAACGGCGAGGCCAAAAAAGAGGAGCCTCCAATTGTGCTGAAGCCT
ctttgttt CT-rich tract
tttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgccctccatccttctttcgtcgccatgagaagactaatgttggcaactgttctcgtattcatcgtttccctcggtttcctggaccactgtgctttgtttaccagAGTCTTGGTTGTCATCAAATGCGAGCTTGTGTGCCAAGCGCTTGACGCCGAGATCAACGGCGAGGCCAAAAAAGAGGAGCCTCCAATTGTGCTGAAGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC