1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attattgtgtgtgaactaatcttccattttcatccctagtgcacagccactgtttacttttttttgtatattttgtactgaactacctgtcattttgcagTTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGATAATTTACAGAGGACTCAGAG
species | Zea mays |
transcript | GRMZM2G097059_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCCAGATTCCGCTGTACAGAACAAAGAGAACGAG TTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGATEST: gi|24961636|gb|CA483635.1|CA483635
genomic: GCCCAGATACTGCTGTACAGAACAAAGAGAACGAGgtaattagct ... cattttgcagTTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGAT
EST: NNNNCAGTTATGCAGGCCCAGATACTGCTGTACAGAACAAAGAGAACGAG TTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGATEST: gi|78115260|gb|DV533648.1|DV533648
genomic: AAAACAGTTATGCAGGCCCAGATACTGCTGTACAGAACAAAGAGAACGAGgtaattagct ... cattttgcagTTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGAT
EST: AAAACAGTTATGCAGGCCCAGATACTGCTGTACAGAACAAAGAGAACGAG TTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGATEST: gi|78074567|gb|DV503001.1|DV503001
genomic: AAAACAGTTATGCAGGCCCAGATACTGCTGTACAGAACAAAGAGAACGAGgtaattagct ... cattttgcagTTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGAT
EST: TATGCAGGCCCAGATACTGCTGTACAGAACAAAGAGAACGAG TTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGATEST: gi|8665529|gb|BE186345.1|BE186345
genomic: TATGCAGGCCCAGATACTGCTGTACAGAACAAAGAGAACGAGgtaattagct ... cattttgcagTTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGAT
EST: NNNNCAGTTATGTTGGCCCAGATACTGCTGTACAGAACAAAGAGAACGAG TTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGATEST: gi|67016010|gb|CO444759.1|CO444759
genomic: AAAACAGTTATGCAGGCCCAGATACTGCTGTACAGAACAAAGAGAACGAGgtaattagct ... cattttgcagTTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGAT
EST: NNNNCAGTTATGCAGGCCCAGATACTGCTGTACAGAACAAAGAGAACGAG TTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGATEST: gi|8383276|gb|BE056219.1|BE056219
genomic: AAAACAGTTATGCAGGCCCAGATACTGCTGTACAGAACAAAGAGAACGAGgtaattagct ... cattttgcagTTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGAT
EST: NNNNCAGTTATGCAGGCCCAGATACTGCTGTACAGAACATATATATCGAG TTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGATEST: gi|18648993|gb|BM497812.1|BM497812
genomic: AAAACAGTTATGCAGGCCCAGATACTGCTGTACAGAACAAAGAGAACGAGgtaattagct ... cattttgcagTTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGAT
EST: NNNNCAGTTATGCAGGCCCAGATACTGCTGTACAGAACAAAGAGAACGAG TTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGAT
genomic: AAAACAGTTATGCAGGCCCAGATACTGCTGTACAGAACAAAGAGAACGAGgtaattagct ... cattttgcagTTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGAT
gccactgtttacttttttttgtatattttgtactgaactacctgtcattttgcagTTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGATAATTTACAGAGGACTCAGAG
tcatttt CT-rich tract
tgtttacttttttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attattgtgtgtgaactaatcttccattttcatccctagtgcacagccactgtttacttttttttgtatattttgtactgaactacctgtcattttgcagTTAGTCCAGAACAGCCGCAATGAGTACCTTAAACTGAAAGCAAAGGTGGATAATTTACAGAGGACTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - gaactaa
- - - - - - - - - - - - - - - catccct
- - - - - - - - - - - - - - - - - - - - gcacagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacctg