1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taatcatatattcatatttcattttcacgtctcctagacttgaaatatttatgatgtcttactcgttgatttttttattcaattgtattttttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACAGATGACAAAAGAAAGGAGTTCATAGCTTCTCTTCACAAGAGGAAAACA
species | Zea mays |
transcript | GRMZM2G094978_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGGAAAG GATGACAGCTTTACTTCAACCAGAACAGGATGGCCGGCTAAAGCCCCAAAEST: gi|91056651|gb|EB167069.1|EB167069
genomic: ATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGG-AAAGgtcagtctcc ... tttttttcagGATGACAGCTT-ACTTCAACCAGA-CAGGATGGCCGGCTAAAGCACCAAA
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|211135672|gb|FL156035.1|FL156035
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCAEST: gi|211136605|gb|FL156036.1|FL156036
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCA
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|149014075|gb|EE043602.2|EE043602
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|71448345|gb|DR829395.1|DR829395
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGATEST: gi|13490397|gb|BG517161.1|BG517161
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|149112364|gb|EE295251.2|EE295251
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|211136608|gb|FL156039.1|FL156039
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|50333792|gb|CO528918.1|CO528918
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|71764323|gb|DR962260.1|DR962260
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|211136606|gb|FL156037.1|FL156037
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCGAAGACEST: gi|211136613|gb|FL156044.1|FL156044
genomic: GAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|71300514|gb|DR786312.1|DR786312
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|211136615|gb|FL156046.1|FL156046
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|13558960|gb|BG550315.1|BG550315
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|86467369|gb|DY233739.1|DY233739
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAAAATTGCTCAAGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|71300530|gb|DR786320.1|DR786320
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|101382873|gb|EB813490.1|EB813490
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|50327117|gb|CO522243.1|CO522243
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|101388003|gb|EB816016.1|EB816016
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACEST: gi|71766392|gb|DR964329.1|DR964329
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
EST: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAG GATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
genomic: GATGTTGAACTGTATGGAGAATTGCTCAGGATAGGTGGTGGAAAGGAAAGgtcagtctcc ... tttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGAC
tatttatgatgtcttactcgttgatttttttattcaattgtattttttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACAGATGACAAAAGAAAGGAGTTCATAGCTTCTCTTCACAAGAGGAAAACA
ttgtattttttttttc CT-rich tract
ttgatttttttattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatcatatattcatatttcattttcacgtctcctagacttgaaatatttatgatgtcttactcgttgatttttttattcaattgtattttttttttcagGATGACAGCTTACTTCAACCAGACAGGATGGCCGGCTAAAGCACCAAAGACAGATGACAAAAGAAAGGAGTTCATAGCTTCTCTTCACAAGAGGAAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - atgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattt