1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcttaccattgctgattgttctatatactatttacatgttatcagttatctaatatttttcatctgcagGCGGCCATGCAAAAACCTTGATGTTTGTGCAGATCAACCCAGATGTCTCATCTTATTCGGAGACTTTAAGTACTTTGAAGTTTGCTGAAAGGGTTTCTGG
species | Zea mays |
transcript | GRMZM2G093391_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTACCCTACCGGAACAGCAAACTTACACAAGTCCTACAGAGTTCTTTGG GCGGCCATGCAAAAACCTTGATGTTTGTGCAGATCAACCCAGATGTCTCATEST: gi|71441862|gb|DR822912.1|DR822912
genomic: TGTACCCTACCGGAACAGCAAACTTACACAAGTCCTACAGAGTTCTTTGGgtgcttacca ... tcatctgcagGCGGCCATGCAAAAACCTTGATGTTTGTGCAGATCAACCCAGATGTCTCAT
EST: TGTACCCTACCGGAACAGCAAACTTACACAAGTCCTACAGAGTTCTTTGG GCGGCCATGCAAAAACCTTGATGTTTGTGCAGATCAACCCAGATGTCTCAT
genomic: TGTACCCTACCGGAACAGCAAACTTACACAAGTCCTACAGAGTTCTTTGGgtgcttacca ... tcatctgcagGCGGCCATGCAAAAACCTTGATGTTTGTGCAGATCAACCCAGATGTCTCAT
attgttctatatactatttacatgttatcagttatctaatatttttcatctgcagGCGGCCATGCAAAAACCTTGATGTTTGTGCAGATCAACCCAGATGTCTCATCTTATTCGGAGACTTTAAGTACTTTGAAGTTTGCTGAAAGGGTTTCTGG
atctaat putative branch site (score: 12)
tttttcatct CT-rich tract
ttatcagttatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttaccattgctgattgttctatatactatttacatgttatcagttatctaatatttttcatctgcagGCGGCCATGCAAAAACCTTGATGTTTGTGCAGATCAACCCAGATGTCTCATCTTATTCGGAGACTTTAAGTACTTTGAAGTTTGCTGAAAGGGTTTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG