1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtgcagtgtttattcattttccatccaaatcatccagatataggttgcatcagagattcatagttggctatctattgcatgtagttaaatacacagtcatgttgttatctcttctgttattgaagtgttttgtatcttagagtccaactgcattactgacataaatgcccctcttctattgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT
species | Zea mays |
transcript | GRMZM2G087144_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTACGGCTGAAGTTTGGCCCTTCCTACTAGGAGTEST: gi|50325323|gb|CO520449.1|CO520449
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTEST: gi|148959376|gb|EC905424.2|EC905424
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCCTTCCTACTAGGAGTEST: gi|211240371|gb|FL028807.1|FL028807
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCC-TTCCTACTAGGAGT
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTEST: gi|148964953|gb|EE015802.2|EE015802
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTEST: gi|211328212|gb|FL409834.1|FL409834
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTEST: gi|211397522|gb|FL373465.1|FL373465
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT
EST: GGAAGCTTCGTGATGGTGGGAGGGAGTTTCTCAAGAAAGNTCGCAGTGGT GGCATGGAAGCAAG-ATTTAGGGGCTGAAGTTTGGCCCTTCCTACTAGGAGEST: gi|211240372|gb|FL028808.1|FL028808
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATT-AGGG-CTGAAGTTTGGCCCTTCCTACTAGGAG
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTEST: gi|211476313|gb|FL383250.1|FL383250
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT
EST: AAGCTTCGTGATGGTGGAANGGAAAGTT-CTCA-GAAAGT-CGCAGTGGT GGCATTGAAGCA-GCATTAGGGCTGAAGTTTGCCCCTEST: gi|149106092|gb|EE291756.2|EE291756
genomic: AAGCTTCGTGATGGTGGAA-GGAA-GTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCT
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTEST: gi|148981030|gb|EE027393.2|EE027393
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCCAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTEST: gi|148939166|gb|EC883612.2|EC883612
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT
tatcttagagtccaactgcattactgacataaatgcccctcttctattgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT
tactgac putative branch site (score: 17)
tgcccctcttctatt putative PPT
acataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgcagtgtttattcattttccatccaaatcatccagatataggttgcatcagagattcatagttggctatctattgcatgtagttaaatacacagtcatgttgttatctcttctgttattgaagtgttttgtatcttagagtccaactgcattactgacataaatgcccctcttctattgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT
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