1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acatgaatgttttgaatatcacatttagatagtttagctgcagaccgtatggagacttttgggattttctccatccagtgtctaatatctgaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG
species | Zea mays |
transcript | GRMZM2G087095_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|6695990|gb|AW289098.1|AW289098
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|50331176|gb|CO526302.1|CO526302
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|74236437|gb|DT644351.1|DT644351
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|32838769|gb|CD978450.1|CD978450
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|78112771|gb|DV531165.1|DV531165
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|91870871|gb|EB401123.1|EB401123
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|8368837|gb|BE051782.1|BE051782
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|76285512|gb|DV025080.1|DV025080
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|71425166|gb|DR806565.1|DR806565
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|71421466|gb|DR805441.1|DR805441
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: TCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|71330056|gb|DR801767.1|DR801767
genomic: TCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|32847296|gb|CD986977.1|CD986977
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|71421467|gb|DR805442.1|DR805442
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|76285511|gb|DV025079.1|DV025079
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|211463199|gb|FL126648.1|FL126648
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCATATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGEST: gi|71425163|gb|DR806564.1|DR806564
genomic: ACATCTATGCTTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
EST: TTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
genomic: TTCAGCCGATGCTGCAGTGCCATCTAGCGATCAGATGCAGgtgcgaggac ... gaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAG
cgtatggagacttttgggattttctccatccagtgtctaatatctgaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG
gtctaat putative branch site (score: 94)
tctaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgaatgttttgaatatcacatttagatagtttagctgcagaccgtatggagacttttgggattttctccatccagtgtctaatatctgaaagtgcagAATAACTATCAAGAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- atgaatg
- - - - - - - - - - - - - - - - - - gctgcag