1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ctatagtatgttttgtcttgaacagttaaattgggtttccttgcaaggcatctcatgctatattttagcttacatttgttccttttgttgtccaattcagGTTTTGTTTTATGCTTGTTCATTTGTCTATGGACAATGGACTAGTTGCTGCACTGCTTTTGTGAGTCACCATGGGAAGCAGTGGAGCAGATACATCGTCT
species | Zea mays |
transcript | GRMZM2G074373_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCGCCGCCTCCCGGTAGCGGATCCGGCGCCGGCTCGCGCCCCCCGACAG GTTTTGTTTTATGCTTGTTCATTTGTCTATGGACAATGGACTAGTTGCTGCEST: gi|78090597|gb|DV518971.1|DV518971
genomic: ATCGCCGCCTCCCGGTAGCGGATCCGGCGCCGGCTCGCGCCCCCCGACAGgtaccctacc ... tccaattcagGTTTTGTTTTATGCTTGTTCATTTGTCTATGGACAATGGACTAGTTGCTGC
EST: ATCGCCGCCTCCCGGTAGCGGATCCGGCGCCGGCTCGCGCCCCCCGACAG GTTTTGTTTTATGCTTGTTCATTTGTCTATGGACAATGGACTAGTTGCTGCEST: gi|211035651|gb|FK982762.1|FK982762
genomic: ATCGCCGCCTCCCGGTAGCGGATCCGGCGCCGGCTCGCGCCCCCCGACAGgtaccctacc ... tccaattcagGTTTTGTTTTATGCTTGTTCATTTGTCTATGGACAATGGACTAGTTGCTGC
EST: ATCGCCGCCTCCCGGTAGCGGATCCGGCGCCGGCTCGCGCCCCCCGACAG GTTTTGTTTTATGCTTGTTCATTTGTCTATGGACAATGGACTAGTTGCTGCEST: gi|93013445|gb|EB638965.1|EB638965
genomic: ATCGCCGCCTCCCGGTAGCGGATCCGGCGCCGGCTCGCGCCCCCCGACAGgtaccctacc ... tccaattcagGTTTTGTTTTATGCTTGTTCATTTGTCTATGGACAATGGACTAGTTGCTGC
EST: ATCGCCGCCTCCCGGTAGCGGATCCGGCGCCGGCTCGCGCCCCCCGACAG GTTTTGTTTTATGCTTGTTCATTTGTCTATGGACAATGGACTAGTTGCTGCEST: gi|91049000|gb|EB159418.1|EB159418
genomic: ATCGCCGCCTCCCGGTAGCGGATCCGGCGCCGGCTCGCGCCCCCCGACAGgtaccctacc ... tccaattcagGTTTTGTTTTATGCTTGTTCATTTGTCTATGGACAATGGACTAGTTGCTGC
EST: ATCGCCGCCTCCCGGTAGCGGATCCGGCGCCGGCTCGCGCCCCCCGACAG GTTTTGTTTTATGCTTGTTCATTTGTCTATGGACAATGGACTAGTTGCTGC
genomic: ATCGCCGCCTCCCGGTAGCGGATCCGGCGCCGGCTCGCGCCCCCCGACAGgtaccctacc ... tccaattcagGTTTTGTTTTATGCTTGTTCATTTGTCTATGGACAATGGACTAGTTGCTGC
aggcatctcatgctatattttagcttacatttgttccttttgttgtccaattcagGTTTTGTTTTATGCTTGTTCATTTGTCTATGGACAATGGACTAGTTGCTGCACTGCTTTTGTGAGTCACCATGGGAAGCAGTGGAGCAGATACATCGTCT
agcttac putative branch site (score: 3)
ttccttttgttgtcc putative PPT
tatattttagctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatagtatgttttgtcttgaacagttaaattgggtttccttgcaaggcatctcatgctatattttagcttacatttgttccttttgttgtccaattcagGTTTTGTTTTATGCTTGTTCATTTGTCTATGGACAATGGACTAGTTGCTGCACTGCTTTTGTGAGTCACCATGGGAAGCAGTGGAGCAGATACATCGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - tgttttg
- - - - - - - - - - - - - - - - - - -tccttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgcta