1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgggtgtgggttccatttcaatttgtgtgatttgccatgatttcttattacttagttttgactgaaaatctctaatatatctttttggatgcagAAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAAGCCATACA
species | Zea mays |
transcript | GRMZM2G070708_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCAAGAGCAAGAGCTCCAACTTGTATCAGAAGATTGCAACACAAAGAGG AAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAAEST: gi|76285604|gb|DV025172.1|DV025172
genomic: GGCAAGAGCAAGAGCTCCAACTTGTATCAGAAGATTGCAACACAAAGAGGgtgggtgtgg ... ttggatgcagAAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAA
EST: GGCAAGAGCAAGAGCTCCAACTTGTATCAGAAGATTGCAACACAAAGAGG AAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAAEST: gi|149072697|gb|EE160933.2|EE160933
genomic: GGCAAGAGCAAGAGCTCCAACTTGTATCAGAAGATTGCAACACAAAGAGGgtgggtgtgg ... ttggatgcagAAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAA
EST: GGCAAGAGCAAGAGCTCCAACTTGTATCAGAAGATTGCAACACAAAGAGG AAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAAEST: gi|148993654|gb|EE033841.2|EE033841
genomic: GGCAAGAGCAAGAGCTCCAACTTGTATCAGAAGATTGCAACACAAAGAGGgtgggtgtgg ... ttggatgcagAAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAA
EST: GGCAAGAGCAAGAGCTCCAACTTGTATCAGAAGATTGCAACACAAAGAGG AAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAAEST: gi|71447666|gb|DR828716.1|DR828716
genomic: GGCAAGAGCAAGAGCTCCAACTTGTATCAGAAGATTGCAACACAAAGAGGgtgggtgtgg ... ttggatgcagAAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAA
EST: GGCAAGAGCAAGAGCTCCAACTTGTATCAGAAGATTGCAACACAAAGAGG AAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAA
genomic: GGCAAGAGCAAGAGCTCCAACTTGTATCAGAAGATTGCAACACAAAGAGGgtgggtgtgg ... ttggatgcagAAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAA
atttcttattacttagttttgactgaaaatctctaatatatctttttggatgcagAAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAAGCCATACA
ctctaat putative branch site (score: 3)
tatcttttt CT-rich tract
aaaatctctaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtgtgggttccatttcaatttgtgtgatttgccatgatttcttattacttagttttgactgaaaatctctaatatatctttttggatgcagAAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAAGCCATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC