1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgtttgtttctctgcacatttgcttcatcacctgttctgtcctgtgtaaacatgggcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTACTTCCCCTATCCATA
species | Zea mays |
transcript | GRMZM2G070605_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|76914837|gb|DV165713.1|DV165713
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|149013546|gb|EE043037.2|EE043037
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|101394747|gb|EB819306.1|EB819306
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|148966890|gb|EE018012.2|EE018012
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|149075192|gb|EE163691.2|EE163691
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|148986357|gb|EE030094.2|EE030094
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|149075125|gb|EE163618.2|EE163618
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|211407726|gb|FL367074.1|FL367074
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAGGATCTACAACTAEST: gi|149112153|gb|EE191267.2|EE191267
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|91050012|gb|EB160430.1|EB160430
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|149026859|gb|EE046212.2|EE046212
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|149097452|gb|EE183315.2|EE183315
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|149015293|gb|EE045098.2|EE045098
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|71766326|gb|DR964263.1|DR964263
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCTTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|211475706|gb|FL352571.1|FL352571
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTAEST: gi|78077772|gb|DV506204.1|DV506204
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
EST: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTG GTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
genomic: TTCCTGGAGAAGTACCCGGCCCTGGTCACTGGCTTCTTCTTCTTCATGTGgtacgtttgt ... gcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTA
tctgcacatttgcttcatcacctgttctgtcctgtgtaaacatgggcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTACTTCCCCTATCCATA
cttctgc CT-rich tract
taaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtttgtttctctgcacatttgcttcatcacctgttctgtcctgtgtaaacatgggcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTACTTCCCCTATCCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG