1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcgtatcccggctcttctccttccctttttctgcgccatcatcatgttggtcttctgcctgtggtctcctgtgatcgacgaactgatgcgcgattttactgcagGGTGCTGCCTGTCTCTGTGGTG
species | Zea mays |
transcript | GRMZM2G065696_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAACGTCTGGCACACCGACCTCACCAACGCCGTCGCCGCGGACCTCCCGT GGTGCTGCCTGTCTCTGTGGTGEST: gi|14242658|gb|BG840354.2|BG840354
genomic: CAACGTCTGGCACACCGACCTCACCAACGCCGTCGCCGCGGACCTCCCGTgtgcgtatcc ... tttactgcagGGTGCTGCCTGTCTCTGTGGTG
EST: CAACGTCTGGCACACCGACCTCACCAACGCCGTCGCCGCGGACCTCCCGT GGTGCTGCCTGTCTCTGTGGTGEST: gi|51592771|gb|CV071917.1|CV071917
genomic: CAACGTCTGGCACACCGACCTCACCAACGCCGTCGCCGCGGACCTCCCGTgtgcgtatcc ... tttactgcagGGTGCTGCCTGTCTCTGTGGTG
EST: CAACGTCTGGCACACCGACCTCACCAACGCCGTCGCCGCGGACCTCCCGT GGTGCTGCCTGTCTCTGTGGTGEST: gi|47961905|gb|CN844614.1|CN844614
genomic: CAACGTCTGGCACACCGACCTCACCAACGCCGTCGCCGCGGACCTCCCGTgtgcgtatcc ... tttactgcagGGTGCTGCCTGTCTCTGTGGTG
EST: CAACGTCTGGCACACCGACCTCACCAACGCCGTCGCCGCGGACCTCCCGT GGTGCTGCCTGTCTCTGTGGTGEST: gi|32919836|gb|CF024648.1|CF024648
genomic: CAACGTCTGGCACACCGACCTCACCAACGCCGTCGCCGCGGACCTCCCGTgtgcgtatcc ... tttactgcagGGTGCTGCCTGTCTCTGTGGTG
EST: CAACGTCTGGCACACCGACCTCACCAACGCCGTCGCCGCGGACCTCCCGT GGTGCTGCCTGTCTCTGTGGTG
genomic: CAACGTCTGGCACACCGACCTCACCAACGCCGTCGCCGCGGACCTCCCGTgtgcgtatcc ... tttactgcagGGTGCTGCCTGTCTCTGTGGTG
gtcttctgcctgtggtctcctgtgatcgacgaactgatgcgcgattttactgcagGGTGCTGCCTGTCTCTGTGGTG
aactgat putative branch site (score: 6)
ttttact putative PPT
attttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtatcccggctcttctccttccctttttctgcgccatcatcatgttggtcttctgcctgtggtctcctgtgatcgacgaactgatgcgcgattttactgcagGGTGCTGCCTGTCTCTGTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC