1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atatggttatatttgacggtaatacgacatgcaaacatttaggtctaccaatgttataaaatttatttaagttagtgtttctgaagactcctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCGCTTTACCTGACAGAATACAATCAATCCCAGATGGTAGTTCTACTGCCA
species | Zea mays |
transcript | GRMZM2G057251_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|74237329|gb|DT645243.1|DT645243
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|71770367|gb|DR968304.1|DR968304
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|76936954|gb|DV174978.1|DV174978
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|60338253|gb|DN205226.1|DN205226
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: CCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|211512978|gb|FL131661.1|FL131661
genomic: CCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|76018601|gb|DT945771.1|DT945771
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|78076771|gb|DV505205.1|DV505205
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|60397948|gb|DN230764.1|DN230764
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: GAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|149088922|gb|EE178063.2|EE178063
genomic: GAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|211515339|gb|FL131682.1|FL131682
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|71299507|gb|DR785763.1|DR785763
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|211515335|gb|FL131678.1|FL131678
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|211512981|gb|FL131664.1|FL131664
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|211512983|gb|FL131666.1|FL131666
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGC-TCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGEST: gi|211512972|gb|FL131655.1|FL131655
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTG
EST: AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|67038186|gb|CO464516.1|CO464516
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|211517692|gb|FL131690.1|FL131690
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|211515328|gb|FL131671.1|FL131671
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG ---AAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGEST: gi|71314556|gb|DR793900.1|DR793900
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTG
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGGTGCCEST: gi|78086622|gb|DV515015.1|DV515015
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|74235878|gb|DT643792.1|DT643792
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|211515326|gb|FL131669.1|FL131669
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAAGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATCGCGACCCGTAGTGATCTEST: gi|148932647|gb|EC876561.2|EC876561
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCT
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|211515331|gb|FL131674.1|FL131674
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGEST: gi|15313737|gb|BI478932.1|BI478932
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTG
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|211517691|gb|FL131689.1|FL131689
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|211515338|gb|FL131681.1|FL131681
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|76281470|gb|DV021038.1|DV021038
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|149015005|gb|EE044748.2|EE044748
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCEST: gi|149070317|gb|EE158717.2|EE158717
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
taccaatgttataaaatttatttaagttagtgtttctgaagactcctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCGCTTTACCTGACAGAATACAATCAATCCCAGATGGTAGTTCTACTGCCA
ctccttt CT-rich tract
atgttataaaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatggttatatttgacggtaatacgacatgcaaacatttaggtctaccaatgttataaaatttatttaagttagtgtttctgaagactcctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCGCTTTACCTGACAGAATACAATCAATCCCAGATGGTAGTTCTACTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttct