1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcctgaaattattcgatatacagtgctcttacagtatttatctaaaatacgtggtgctcttacggtagctgtatgtgtcaattcccaaatttgtttggaattgatgttctatgttgtttgtctctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
species | Zea mays |
transcript | GRMZM2G047219_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|211142589|gb|FL359509.1|FL359509
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|211529297|gb|FL356731.1|FL356731
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|17931616|gb|BM268576.1|BM268576
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|149015400|gb|EE045246.2|EE045246
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|74243388|gb|DT651302.1|DT651302
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|148966374|gb|EE017368.2|EE017368
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTTACCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|12045929|gb|BF728159.1|BF728159
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|211072521|gb|FL326767.1|FL326767
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|148996959|gb|EE035773.2|EE035773
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|148935909|gb|EC879959.2|EC879959
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGCEST: gi|76293497|gb|DV033065.1|DV033065
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGC
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|78180658|gb|DV550986.1|DV550986
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|32848760|gb|CD988441.1|CD988441
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|211394348|gb|FL351051.1|FL351051
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|89251955|gb|DY623741.1|DY623741
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|148966373|gb|EE017367.2|EE017367
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTTAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|89762676|gb|DY690164.1|DY690164
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|6742502|gb|AW313317.1|AW313317
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|71774203|gb|DR972081.1|DR972081
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTGEST: gi|211267296|gb|FL319984.1|FL319984
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGNAGCAG -TGGATTGGATTGGCCAAAAGAATCAA-TTGATGCTGEST: gi|91055640|gb|EB166058.1|EB166058
genomic: AGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTG-AGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
EST: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
genomic: AAGGGGGGCGCCCTGAGTTTTACTTTGAAGAAGGGAGTTATCCTGAGCAGgtgcctgaaa ... ctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
caattcccaaatttgtttggaattgatgttctatgttgtttgtctctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
aattgat putative branch site (score: 4)
tttgtctctgtttc putative PPT
aaatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctgaaattattcgatatacagtgctcttacagtatttatctaaaatacgtggtgctcttacggtagctgtatgtgtcaattcccaaatttgtttggaattgatgttctatgttgtttgtctctgtttcaagGTGGATTGGATTGGCCAAAAGAATCAAATTGATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG