1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgcgcgccgccgccgctctctttttccttcgccgcgtccgcgtctatctattagactatagacggcgatgatattactgatagcgttcgagctcgtatataacgcatgcacgtacgcaccatgctcgacgagcagATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGCGACGCGGTGGAGGAGCTCCAGATCGAGTCGCTCGTCATGGGCAGCCGCG
species | Zea mays |
transcript | GRMZM2G045278_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAG ATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGTAGAAGGTGTGCEST: gi|50337518|gb|CO532644.1|CO532644
genomic: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAGgtgcgcgccg ... cgacgagcagATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGC
EST: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAG ATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGCEST: gi|32869247|gb|CF008929.1|CF008929
genomic: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAGgtgcgcgccg ... cgacgagcagATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGC
EST: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAG ATGCGCGTGGTGGTGAAGATGTACTGGGGTGATCCGAGGGAGAAGGTGTGCEST: gi|21481556|gb|BQ578239.1|BQ578239
genomic: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAGgtgcgcgccg ... cgacgagcagATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGC
EST: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAG ATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGCEST: gi|101383316|gb|EB813714.1|EB813714
genomic: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAGgtgcgcgccg ... cgacgagcagATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGC
EST: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAG ATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGCEST: gi|87154532|gb|DY399321.1|DY399321
genomic: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAGgtgcgcgccg ... cgacgagcagATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGC
EST: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAG ATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGCEST: gi|26454905|gb|CA826488.1|CA826488
genomic: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAGgtgcgcgccg ... cgacgagcagATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGC
EST: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAG ATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGCEST: gi|21329933|gb|BQ485314.1|BQ485314
genomic: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAGgtgcgcgccg ... cgacgagcagATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGC
EST: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAG ATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGCEST: gi|87154904|gb|DY399693.1|DY399693
genomic: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAGgtgcgcgccg ... cgacgagcagATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGC
EST: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAG ATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGC
genomic: ATGACGCGGAGGTGTTCGACATGCTCAACGCCGCGGCCCGGCAGAAAGAGgtgcgcgccg ... cgacgagcagATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGC
tagcgttcgagctcgtatataacgcatgcacgtacgcaccatgctcgacgagcagATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGCGACGCGGTGGAGGAGCTCCAGATCGAGTCGCTCGTCATGGGCAGCCGCG
atataac putative branch site (score: 28)
tatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcgccgccgccgctctctttttccttcgccgcgtccgcgtctatctattagactatagacggcgatgatattactgatagcgttcgagctcgtatataacgcatgcacgtacgcaccatgctcgacgagcagATGCGCGTGGTGGTCAAGATGTACTGGGGTGACCCGAGGGAGAAGGTGTGCGACGCGGTGGAGGAGCTCCAGATCGAGTCGCTCGTCATGGGCAGCCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT