1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagcgctcgctggccttctcattattggcatcgtctctgtgtaaatttgggaataatggggttcttggggtctgatgatgtggtgagatgattttgttgttgtgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGGCAAGGGCGAGAACAGCCGCAGCTCAGGGGGGCGATAAGGAGGCATCAC
species | Zea mays |
transcript | GRMZM2G038588_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAV-GNGTACACGTCTGACGAG ACTCNAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGEST: gi|211060219|gb|FL171340.1|FL171340
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211060225|gb|FL171346.1|FL171346
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAMCTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGEST: gi|76290710|gb|DV030278.1|DV030278
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|71329825|gb|DR801629.1|DR801629
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211063175|gb|FL171357.1|FL171357
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGBGTGAGCGAGAKCGAGTACACGTCTGACGAG ACTCCAATGGTAATEST: gi|211057223|gb|FL171333.1|FL171333
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAAT
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCEST: gi|50338324|gb|CO533450.1|CO533450
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGC
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211063174|gb|FL171356.1|FL171356
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|149010087|gb|EE041894.2|EE041894
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211060222|gb|FL171343.1|FL171343
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|50338770|gb|CO533896.1|CO533896
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211060214|gb|FL171335.1|FL171335
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|91870592|gb|EB400974.1|EB400974
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|148965177|gb|EE015986.2|EE015986
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211060213|gb|FL171334.1|FL171334
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|31611805|gb|CD568427.1|CD568427
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211063171|gb|FL171353.1|FL171353
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|78122374|gb|DV540758.1|DV540758
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGGGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAGTGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCGGGEST: gi|93014407|gb|EB639927.1|EB639927
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACCCGCACGCCATTCTGGATGCCCGCAGGEST: gi|71323425|gb|DR798363.1|DR798363
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|149034779|gb|EE155079.2|EE155079
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211063178|gb|FL171360.1|FL171360
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211060216|gb|FL171337.1|FL171337
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211063168|gb|FL171350.1|FL171350
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211063169|gb|FL171351.1|FL171351
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGTGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|78118117|gb|DV536504.1|DV536504
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|71448836|gb|DR829886.1|DR829886
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211060217|gb|FL171338.1|FL171338
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|148972546|gb|EE023508.2|EE023508
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACCCGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211060223|gb|FL171344.1|FL171344
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|149073621|gb|EE161923.2|EE161923
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211060226|gb|FL171347.1|FL171347
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: GACGGTGGAACTGGACGGGGTGAGCGAGAGMGTGTTACACGTCTGACGAG ACTCCAATGGTAATTTATGTEST: gi|148952022|gb|EC897808.2|EC897808
genomic: GACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGT-ACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGT
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|71324528|gb|DR798965.1|DR798965
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|78075701|gb|DV504135.1|DV504135
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211074605|gb|FK960578.1|FK960578
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: TGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|71435658|gb|DR816708.1|DR816708
genomic: TGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|211180038|gb|FL171366.1|FL171366
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGEST: gi|148999970|gb|EE037045.2|EE037045
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGEST: gi|91053337|gb|EB163755.1|EB163755
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
EST: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAG ACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
genomic: CGACGGTGGAACTGGACGGGGTGAGCGAGAGCGAGTACACGTCTGACGAGgtgagcgctc ... tgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGG
ggggttcttggggtctgatgatgtggtgagatgattttgttgttgtgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGGCAAGGGCGAGAACAGCCGCAGCTCAGGGGGGCGATAAGGAGGCATCAC
gtctgat putative branch site (score: 4)
atgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgctcgctggccttctcattattggcatcgtctctgtgtaaatttgggaataatggggttcttggggtctgatgatgtggtgagatgattttgttgttgtgggttacagACTCCAATGGTAATTTATGTCAACACGCACGCCATTCTGGATGCCCGCAGGGCAAGGGCGAGAACAGCCGCAGCTCAGGGGGGCGATAAGGAGGCATCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG