1 5' 3' | 2 5' 3' | 3 5' 3' |
...accaggagcaagcccctcctgattagtatataataatcttgtgggaatttcacgtctgaaattgtgcagttctgatcgcttttgtcattttccggagcagGTGATGTGGGCATTCTCCATTTATTTGGAAGCTGTCGCGATATTTCCACAACTTGTGTTGCTACAGCGGACAAGGAATATTGACAACCTGACTGGCCAAT
species | Zea mays |
transcript | GRMZM2G031802_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTGTCTTCTTCTGGCTCTCCTCATTAATGAGAAGTTTACTTTTAGAGAG GTGATGTGGGCATTCTCCATTTATTTGGAAGCTGTCGCGATATTTCCACAAEST: gi|74241403|gb|DT649317.1|DT649317
genomic: CTTGTCTTCTTCTGGCTCTCCTCATTAATGAGAAGTTTACTTTTAGAGAGgtcagtgttt ... tccggagcagGTGATGTGGGCATTCTCCATTTATTTGGAAGCTGTCGCGATATTTCCACAA
EST: CTTGTCTTCTTCTGGCTCTCCTCATTAATGAGAAGTTTACTTTTAGAGAG GTGATGTGGGCATTCTCCATTTATTTGGAAGCTGTCGCGATATTTCCACAAEST: gi|211009468|gb|FL312897.1|FL312897
genomic: CTTGTCTTCTTCTGGCTCTCCTCATTAATGAGAAGTTTACTTTTAGAGAGgtcagtgttt ... tccggagcagGTGATGTGGGCATTCTCCATTTATTTGGAAGCTGTCGCGATATTTCCACAA
EST: CTTGTCTTCTTCTGGCTCTCCTCATTAATGAGAAGTTTACTTTTAGAGAG GTGATGTGGGCATTCTCCATTTATTTGGAAGCTGTCGCGATATTTCCCACA
genomic: CTTGTCTTCTTCTGGCTCTCCTCATTAATGAGAAGTTTACTTTTAGAGAGgtcagtgttt ... tccggagcagGTGATGTGGGCATTCTCCATTTATTTGGAAGCTGTCGCGATATTTCC-ACA
aatttcacgtctgaaattgtgcagttctgatcgcttttgtcattttccggagcagGTGATGTGGGCATTCTCCATTTATTTGGAAGCTGTCGCGATATTTCCACAACTTGTGTTGCTACAGCGGACAAGGAATATTGACAACCTGACTGGCCAAT
ttctgat putative branch site (score: 3)
cttttgtcattttcc putative PPT
tgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaggagcaagcccctcctgattagtatataataatcttgtgggaatttcacgtctgaaattgtgcagttctgatcgcttttgtcattttccggagcagGTGATGTGGGCATTCTCCATTTATTTGGAAGCTGTCGCGATATTTCCACAACTTGTGTTGCTACAGCGGACAAGGAATATTGACAACCTGACTGGCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA