1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaggaaccctaacttgcttcgatgtttttttcctctgagatttatttgtcgtgggagatctctcgctcgccatgggcaatcagatcctaattctccgggggagaagcgggggagctctactcttgactgcgccctggtactgtgcagAGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAGGCGGAAGAGGGAGGATGACATCGCTCAGCCGTGAGCTGGTCTTCCTCAT
species | Zea mays |
transcript | GRMZM2G030422_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCG AGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAGEST: gi|18655046|gb|BM499851.1|BM499851
genomic: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCGgtaaggaacc ... tactgtgcagAGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
EST: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCG AGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAGEST: gi|18662061|gb|BM501725.1|BM501725
genomic: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCGgtaaggaacc ... tactgtgcagAGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
EST: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCG AGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAGEST: gi|71766923|gb|DR964860.1|DR964860
genomic: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCGgtaaggaacc ... tactgtgcagAGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
EST: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCG AGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAGEST: gi|18662063|gb|BM501726.1|BM501726
genomic: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCGgtaaggaacc ... tactgtgcagAGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
EST: GCATAGGTCGTGGTGCGGCGATCCGCTCCGGGCCTAGGGTTGCG AGTAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAEST: gi|18655047|gb|BM499852.1|BM499852
genomic: GCATAGG-CGTGGTGCGGCGATCCG-TCCGGGCCTAGGGTTGCGgtaaggaacc ... tactgtgcagAG-AGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGA
EST: TTTCCACTGCATAGGCGTGG-GCGGCGATCCG-CCGGGCCTAGGGTTGCG AGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
genomic: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCGgtaaggaacc ... tactgtgcagAGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
ctccgggggagaagcgggggagctctactcttgactgcgccctggtactgtgcagAGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAGGCGGAAGAGGGAGGATGACATCGCTCAGCCGTGAGCTGGTCTTCCTCAT
tcttgac putative branch site (score: 230)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaaccctaacttgcttcgatgtttttttcctctgagatttatttgtcgtgggagatctctcgctcgccatgggcaatcagatcctaattctccgggggagaagcgggggagctctactcttgactgcgccctggtactgtgcagAGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAGGCGGAAGAGGGAGGATGACATCGCTCAGCCGTGAGCTGGTCTTCCTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG