1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtgttgtacttttaggtcgataaaaggattgtataactgcacaaaaaaatggagacactaccaagttgaaatattacctatgtttctattgaagGTCTTTCAACCTCTTGGGGATATTGATCTGGTCTTTGGTGAGGACATCAAGTACACAAATTACAGACGAGAGCTAGATCTTCACACTGCAACAGTCACCG
species | Zea mays |
transcript | GRMZM2G019673_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCCTGAAGCCACATCTGCTGCATATGATCTATCTGGTGACCAAACACAG GTCTTTCAACCTCTTGGGGATATTGATCTGGTCTTTGGTGAGGACATCAAGEST: gi|211162551|gb|FL361306.1|FL361306
genomic: ACCCTGAAGCCACATCTGCTGCATATGATCTATCTGGTGACCAAACACAGgtatgtgttg ... tctattgaagGTCTTTCAACCTCTTGGGGATATTGATCTGGTCTTTGGTGAGGACATCAAG
EST: ACCCTGAAGCCACATCTGCTGCATATGATCTATCTGGTGACCAAACACAG GTCTTTCAACCTCTTGGGGATATTGATCTGGTCTTTGGTGAGGACATCAAGEST: gi|211382984|gb|FL317837.1|FL317837
genomic: ACCCTGAAGCCACATCTGCTGCATATGATCTATCTGGTGACCAAACACAGgtatgtgttg ... tctattgaagGTCTTTCAACCTCTTGGGGATATTGATCTGGTCTTTGGTGAGGACATCAAG
EST: ACCCTGAAGCCACATCTGCTGCATATGATCTATCTGGTGACCAAACACAG GTCTTTCAACCTCTTGGGGATATT
genomic: ACCCTGAAGCCACATCTGCTGCATATGATCTATCTGGTGACCAAACACAGgtatgtgttg ... tctattgaagGTCTTTCAACCTCTTGGGGATATT
cacaaaaaaatggagacactaccaagttgaaatattacctatgtttctattgaagGTCTTTCAACCTCTTGGGGATATTGATCTGGTCTTTGGTGAGGACATCAAGTACACAAATTACAGACGAGAGCTAGATCTTCACACTGCAACAGTCACCG
tttctatt CT-rich tract
aagttgaaatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgttgtacttttaggtcgataaaaggattgtataactgcacaaaaaaatggagacactaccaagttgaaatattacctatgtttctattgaagGTCTTTCAACCTCTTGGGGATATTGATCTGGTCTTTGGTGAGGACATCAAGTACACAAATTACAGACGAGAGCTAGATCTTCACACTGCAACAGTCACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT